View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11805_low_16 (Length: 237)
Name: NF11805_low_16
Description: NF11805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11805_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 14507048 - 14506930
Alignment:
| Q |
16 |
gtttgagtccgccactccattcttgatcaacaacttgatattattcgacacacgcgtggctccaaagaaattccgattgtgaactgcacaagcaagggtg |
115 |
Q |
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| T |
14507048 |
gtttgagtccgccactccattcttgatcaacaacttgatattatttgacacacgcgtggctccaaagaaattccgattgtgaactgcacaagcaagggtg |
14506949 |
T |
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| Q |
116 |
tcgtggtgagatttcaaga |
134 |
Q |
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| T |
14506948 |
tcgtggtgagatttcaaga |
14506930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 14494836 - 14494723
Alignment:
| Q |
124 |
agatttcaagaatgtatacgccaattcataggtcggtatcattagattgttgaggcttgcagaaagtactgtagggttcttactgacaaggttaataatg |
223 |
Q |
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| T |
14494836 |
agattgcaagaatctgtacaccaattcataggttgggactatttgattcttgaggcttacagacaagactctagggttcttacaaacaaggttaacaatg |
14494737 |
T |
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| Q |
224 |
tcagaggtagaagc |
237 |
Q |
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| T |
14494736 |
tcagaggtagaagc |
14494723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 14153036 - 14152923
Alignment:
| Q |
124 |
agatttcaagaatgtatacgccaattcataggtcggtatcattagattgttgaggcttgcagaaagtactgtagggttcttactgacaaggttaataatg |
223 |
Q |
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| T |
14153036 |
agattgcaagaatctgtacaccaattcataggcggggactatttgattgttgaggcttacatacaagactctagggctcttggtgacaatgttaacaatg |
14152937 |
T |
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| Q |
224 |
tcagaggtagaagc |
237 |
Q |
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| T |
14152936 |
tcagaggtagaagc |
14152923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 14162223 - 14162264
Alignment:
| Q |
196 |
agggttcttactgacaaggttaataatgtcagaggtagaagc |
237 |
Q |
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| T |
14162223 |
agggctcttactgacaaggttaacaatgtcagagttagaagc |
14162264 |
T |
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