View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11805_low_20 (Length: 224)
Name: NF11805_low_20
Description: NF11805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11805_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 39814045 - 39814236
Alignment:
| Q |
17 |
agagatgatgttgtaccaaatgagagtcctcttgttgcatgcattagtgaaacaacagaggaaaatatcgccaatgctttgaagcaactttcaaaatctg |
116 |
Q |
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| T |
39814045 |
agagatgatgttgtaccaaatgagagtcctcttgttgcatgcattagtgaaacaacagaggaaaatatagccaatgctttgaagcaactttcaaaatctg |
39814144 |
T |
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| Q |
117 |
gaggaatatgaaatgcttgtgtatagttatgttaactatctgttctnnnnnnnngttatacatttacttttccaagtattgaatgtaattaa |
208 |
Q |
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| T |
39814145 |
gaggaatatgaaatgcttgtgtatagttatgttaactatctgttctaaaaaaaagttatacatttacttttccaagtattgaatgtaattaa |
39814236 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 15802960 - 15803039
Alignment:
| Q |
20 |
gatgatgttgtaccaaatgagagtcctcttgttgcatgcattagtgaaacaacagaggaaaatatcgccaatgctttgaa |
99 |
Q |
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| T |
15802960 |
gatgatgttgtacctgataagagtcctcttgttgcatgtattactgaaacaagtgtggaaaaaattgctaatgctttgaa |
15803039 |
T |
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