View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11805_low_3 (Length: 447)
Name: NF11805_low_3
Description: NF11805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11805_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 27572504 - 27572630
Alignment:
| Q |
55 |
taatgtatatatttttgttattttaacgtggaaaaagtttttcaaccaaattcatatccagttgatattaac--tacatagtggaactcattatttattt |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27572504 |
taatgtatatatttttgttattttaacgtggaaaaagtttttcaaccaaattcatatccagttgatattaactatacatagtggaactcattatttattt |
27572603 |
T |
|
| Q |
153 |
attatatttatcagtgacaaatttttg |
179 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27572604 |
attatatttatcagtgacaaatttttg |
27572630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 175 - 302
Target Start/End: Original strand, 27573571 - 27573698
Alignment:
| Q |
175 |
ttttggtttgcaagtgtgatttgcattttaagaatgtttaatcaaccgtaagggaaaatggcatacaagaaaatttgttttatttcttgagactttggcg |
274 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27573571 |
ttttgggttgcaagtgtgatttgcattttaagaatgtataatcaaccgtaagggaaaatggcatacaagaaaatttgttttagttcttgagactttggcg |
27573670 |
T |
|
| Q |
275 |
ttcacttatatattttatagtttggtgc |
302 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
27573671 |
ttcacttatatattttatagttttgtgc |
27573698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 27573776 - 27573851
Alignment:
| Q |
298 |
ggtgccatgagttttttggctttaaccatgttaaactttaatttgatctatgctttggctaaggacaaaatctaat |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27573776 |
ggtgccatgagttttttggctttaaccatgttaaactttaatttgatctatgctttggctaaggacaaaatctaat |
27573851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 373 - 429
Target Start/End: Original strand, 27573943 - 27573999
Alignment:
| Q |
373 |
taggaggttaaggttattgtgttcaagtcactttgagtggttaaatttgggaggagg |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27573943 |
taggaggttaaggttattgtgttcaagtcactttgagtggttaaatttgggaggagg |
27573999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 22397016 - 22396955
Alignment:
| Q |
48 |
atatttataatgtatatatttttgttattttaacgtggaaaaagtttttcaaccaaattcat |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| ||||||||||| ||| |||| |
|
|
| T |
22397016 |
atatttataaaatatatatttttgttattttaatacggaaagagtttttcaacaaaaatcat |
22396955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University