View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11805_low_4 (Length: 427)
Name: NF11805_low_4
Description: NF11805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11805_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 22847035 - 22847213
Alignment:
| Q |
1 |
aatagggaagcaaggtctacatgcttaaatagtcctgtaagcttcaattatggagcttataaatggactgttcaacttttcactaatgagaaccgattag |
100 |
Q |
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| T |
22847035 |
aatagggaagcaaggtctacatgcttaaatagtcctgatagcttcaattatggagcttataaatggactgttcaacttttcactaatgagaaccgattag |
22847134 |
T |
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| Q |
101 |
aaaaagtacttttcccaatcttctggggcttaatgactctcaggtacatttatttcctagtccctagtttcctacatat |
179 |
Q |
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| T |
22847135 |
aaaaagtacttttcccaatcttctggggcttaatgactctaaggtacatttatttcctagtccctagtttcctacatat |
22847213 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 49130284 - 49130343
Alignment:
| Q |
350 |
gtttattttgcgaaattttaaacaattttgatgcgattttaatgttcgacagatctaaat |
409 |
Q |
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| T |
49130284 |
gtttattttgcgagattttaaacaattttgttgcggttttagtgttcgacatatctaaat |
49130343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 353 - 411
Target Start/End: Complemental strand, 11482996 - 11482938
Alignment:
| Q |
353 |
tattttgcgaaattttaaacaattttgatgcgattttaatgttcgacagatctaaatcc |
411 |
Q |
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| T |
11482996 |
tattttgcgagattttaaacaattttgatgcggttttagagtccgacagatctaaatcc |
11482938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 27640699 - 27640739
Alignment:
| Q |
350 |
gtttattttgcgaaattttaaacaattttgatgcgatttta |
390 |
Q |
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| T |
27640699 |
gtttattttgcgagattttaaacaattttgttgcggtttta |
27640739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 411
Target Start/End: Complemental strand, 12882932 - 12882871
Alignment:
| Q |
350 |
gtttattttgcgaaattttaaacaattttgatgcgattttaatgttcgacagatctaaatcc |
411 |
Q |
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||||| |||||||||||||||||||||||| | ||| |||| ||||| ||||||||||||| |
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| T |
12882932 |
gtttaatttgcgaaattttaaacaattttgctacgaatttagtgttctgcagatctaaatcc |
12882871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 27324622 - 27324678
Alignment:
| Q |
353 |
tattttgcgaaattttaaacaattttgatgcgattttaatgttcgacagatctaaat |
409 |
Q |
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|||||| ||| |||||||||||||||| |||| ||||| ||||||||| |||||||| |
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| T |
27324622 |
tattttacgagattttaaacaattttgttgcggttttagtgttcgacatatctaaat |
27324678 |
T |
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