View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11806_high_1 (Length: 799)
Name: NF11806_high_1
Description: NF11806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11806_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 777; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 1 - 781
Target Start/End: Original strand, 27379725 - 27380505
Alignment:
| Q |
1 |
accactcaaatcaagtgatttcaaaacaatgcagccaccaatatcctgaggaattctaccactaaatcggtttttcttcaaactcaactctctcatatca |
100 |
Q |
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| T |
27379725 |
accactcaaatcaagtgatttcaaaacaatgcagccaccaatatcctgaggaattctaccactaaatcggtttttcttcaaactcaactctctcatatca |
27379824 |
T |
|
| Q |
101 |
taaagattttgaatcccctcaggaatttctccatcaagcaagttatttgaaacatcaagtgactgcaatcccctcaaaaaccacacctcagatggcaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27379825 |
taaagattttgaatcccctcaggaatttctccatcaagcaagttatttgaaacatcaagtgactgcaatcccctcaaaaaccacacctcagatggcaatt |
27379924 |
T |
|
| Q |
201 |
ttccatcaatttgattataagaaaagttaacatttgccaatgtgttacaagtgccaagagaaacgggaatgttacctgtaagattattcttagcaaagtt |
300 |
Q |
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| T |
27379925 |
ttccatcaatttgattataagaaaagttaacatttgccaatgtgttacaagtgccaagagaaacaggaatgttacctgtaagattattcttagcaaagtt |
27380024 |
T |
|
| Q |
301 |
aacagttttcaaagatccacattgttgaaaaaacccttcaggaattgtccctttgagattgttatcactaaagtcaacaacttgtaaacttccaagttta |
400 |
Q |
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| T |
27380025 |
aacagttttcaaagatccacattgttgaaaaaacccttcaggaattgtccctttgagattgttatcactaaagtcaacaacttgtaaacttccaagttta |
27380124 |
T |
|
| Q |
401 |
ggaagatcagggtttatgaaacctgtgaaattgttaccagaaagtgatagagtttgaagaaactgcaatctcaataagcctctatcaatgtgacctgaaa |
500 |
Q |
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| T |
27380125 |
ggaagatcagggtttatgaaacctgtgaaattgttaccagaaagtgatagagtttgaagaaactgcaatctcaataagcctctatcaatgtgacctgaaa |
27380224 |
T |
|
| Q |
501 |
gagagaatccatcaagtataacagaagtgactctattgtttgaagaatcacatttcacaccttcccaattacaaggagtgtaatcatcttcattccatga |
600 |
Q |
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| T |
27380225 |
gagagaatccatcaagtataacagaagtgactctattgtttgaagaatcacatttcacaccttcccaattacaaggagtgtaatcatcttcattccatga |
27380324 |
T |
|
| Q |
601 |
aatgagtttgtgtttaggatcttgtaaaccagctttaaacacaattaagcctaatatatcatcattgaaaacaggatcatcaacagaaaacacttgcagc |
700 |
Q |
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| T |
27380325 |
aatgagtttgtgtttaggatcttgtaaaccagctttaaacacaattaagcctaatatatcatcattgaaaacaggatcatcaacagaaaacacttgcagc |
27380424 |
T |
|
| Q |
701 |
ataacagaaccaaaaaatatcacaaacaacaaatatatgctgctgaatttcatcatctttgtagaatgaaacatgtctaag |
781 |
Q |
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| T |
27380425 |
ataacagaaccaaaaaatatcacaaacaacaaatatatgctgctgaatttcatcatctttgtagaatgaaacatgtctaag |
27380505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 425 - 670
Target Start/End: Complemental strand, 9679680 - 9679435
Alignment:
| Q |
425 |
gtgaaattgttaccagaaagtgatagagtttgaagaaactgcaatctcaataagcctctatcaatgtgacctgaaagagagaatccatcaagtataacag |
524 |
Q |
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||||| ||||| | ||||||||| ||| ||||||| ||||| ||||||| | || | || |||| || ||||||||||||||||||||||| | || || |
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| T |
9679680 |
gtgaagttgttccgagaaagtgaaagaatttgaaggaactgtaatctcataaggcttttaccaatatgtcctgaaagagagaatccatcaagaacaagag |
9679581 |
T |
|
| Q |
525 |
aagtgactctattgtttgaagaatcacatttcacaccttcccaattacaaggagtgtaatcatcttcattccatgaaatgagtttgtgtttaggatcttg |
624 |
Q |
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||| || ||||| |||||| ||||||||| |||||||||||||| |||||| | ||||||||||||||||| ||| ||||||| ||| ||||||| |
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| T |
9679580 |
aagataccctatttgttgaaggatcacatttaacaccttcccaattgcaaggactataatcatcttcattccaagaagaaagtttgtttttcggatcttc |
9679481 |
T |
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| Q |
625 |
taaaccagctttaaacacaattaagcctaatatatcatcattgaaa |
670 |
Q |
| |
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|| ||| ||||| |||||||| || |||| ||||| ||||||||| |
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| T |
9679480 |
tagacctgctttgaacacaatcaaccctagcatatcttcattgaaa |
9679435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 9680022 - 9679961
Alignment:
| Q |
86 |
aactctctcatatcataaagattttgaatcccctcaggaatttctccatcaagcaagttatt |
147 |
Q |
| |
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|||||||||| |||||| ||||||||||| || || ||||| ||||| ||||| |||||||| |
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| T |
9680022 |
aactctctcaaatcatatagattttgaattccttccggaatctctccttcaagaaagttatt |
9679961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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