View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11806_low_3 (Length: 453)
Name: NF11806_low_3
Description: NF11806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11806_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 135 - 377
Target Start/End: Original strand, 5494196 - 5494438
Alignment:
| Q |
135 |
ctgaactcgctgggaataatggttgatggagaattcttcttgtgtgatgatgatcggattcattgaaacgttttgcagtgttaacagatagtgatgagaa |
234 |
Q |
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| T |
5494196 |
ctgaactcgctgggaataatggttgatggagaattcttcttgtgtgatgatgatcggattcattgaaacgttttgcagtgttaacagatagtgatgagaa |
5494295 |
T |
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| Q |
235 |
gaggaagatgaagatgatggtaatgatgatgttgaagcttgaattatgaggtttcatggtgaattttgatgaattgttttgcaaaattcatgtctgaatt |
334 |
Q |
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| T |
5494296 |
gaagaagatgaagatgatggtaatgatgatgttgaagcttgaattatgaggtttcatggtgaattttgatgaattgttttgcaaaattcatgtctgaatt |
5494395 |
T |
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| Q |
335 |
tggttgaatttgttcttccgtgaattcctcagcgggaaataat |
377 |
Q |
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| T |
5494396 |
tggttgaatttgttcttccgtgaattcctcagcgggaaataat |
5494438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 5494062 - 5494149
Alignment:
| Q |
1 |
ggcgttagaagttaacggtgctgcttgattctgattcgacggtggtgcgtctggatattcatggaagaatggaatgttgtcggaggaa |
88 |
Q |
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| T |
5494062 |
ggcgttagaagttaacggtgctgcttgattctgattcgacggtggtgcgtctggatattcatggaagaatggaatgttgtcggaggaa |
5494149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 397 - 437
Target Start/End: Original strand, 5494452 - 5494492
Alignment:
| Q |
397 |
aaagaggaaacttctttcggctgtaagatctagatgctctg |
437 |
Q |
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| T |
5494452 |
aaagaggaaacttctttcggctgtaagatctagatgctctg |
5494492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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