View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11806_low_4 (Length: 434)
Name: NF11806_low_4
Description: NF11806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11806_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 12641856 - 12642215
Alignment:
| Q |
16 |
ataagaaacgcattttctcatctctccaatttaatattttttccatattactaaattttagactataaaatctaatgacgatatattgttcatgcatcac |
115 |
Q |
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| T |
12641856 |
ataagaaacacattttctcatctctccaatttaatattttttccatattactaaattttagactataaaatctaatgaccatatattgttcatgcatcac |
12641955 |
T |
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| Q |
116 |
atagatcttgaaaatgtgatgaatgaacaacatatggttgttagattttatagactgatattttgtaataaagacaaaaatattaaattggagacatgag |
215 |
Q |
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| T |
12641956 |
atagatcttgaaaatgtgatgaatgaacaaca-----ttatcagattttatagactgagattttataatacggacaaaaatattaaattggagacatgag |
12642050 |
T |
|
| Q |
216 |
ggattgcatttcttatcacaacnnnnnnnnnng----taagattggaattatagagatatttttccctcactacattaataaggatgtaattcacaatat |
311 |
Q |
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| T |
12642051 |
agagtgcatttcttatcacaacttttttttttgtgtataagattgaaattatagagacatttttccctcactacattaataaggatgtaattcacaatat |
12642150 |
T |
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| Q |
312 |
atacttgaaaatattcttcatactaccaattaatctttgccgtttgatcatagaaaaatatgtta |
376 |
Q |
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| T |
12642151 |
atacttgaaaatattcttcatactaccaattaatctttgcagtttgatcatagaaaaatatgtta |
12642215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 70 - 359
Target Start/End: Original strand, 12642788 - 12643089
Alignment:
| Q |
70 |
attttagactataaaatctaatgacgatatattgttcatgcatcacatagatcttgaaaatgtgatgaatgaacaacatatggttgttagattttataga |
169 |
Q |
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| T |
12642788 |
attttagattataaaattcaataaccatatattgctcatgaatcacatagatcttggaaatgtgatgaatgaacaatatatggttattagattttataga |
12642887 |
T |
|
| Q |
170 |
ctgatattttgtaataaagacaaaaatattaaattggagacatgagggattgcatttcttatcacaac-----------nnnnnnnnnngtaagattgga |
258 |
Q |
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| T |
12642888 |
ctgaaattttgtaatacggagaaaaatattaaattggagacatgagagattgcatttcttatcacaactttgcaaacttttttttttgtataagattgga |
12642987 |
T |
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| Q |
259 |
attatagagata-tttttccctcactacattaataaggatgtaattcacaatatatacttgaaaatattcttcatactaccaattaatctttgccgtttg |
357 |
Q |
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| T |
12642988 |
attatagagacattttttccctcattacattaataaggatgtaattcacaatatatacttgaaaatattcttcatactatcaattaatctttgttgtttg |
12643087 |
T |
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| Q |
358 |
at |
359 |
Q |
| |
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|| |
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| T |
12643088 |
at |
12643089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 12642949 - 12642847
Alignment:
| Q |
16 |
ataagaaacgcattttctcatctctccaatttaatattttt-tccatattactaaattttagactataaaatctaatgacgatatattgttcatgcatca |
114 |
Q |
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|||||||| ||| | |||||| ||||||||||||||||||| ||| |||||| |||||| || |||||||||||||| || ||||||||||||| ||||| |
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| T |
12642949 |
ataagaaatgcaatctctcatgtctccaatttaatatttttctccgtattacaaaatttcagtctataaaatctaataaccatatattgttcattcatca |
12642850 |
T |
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| Q |
115 |
cat |
117 |
Q |
| |
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||| |
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| T |
12642849 |
cat |
12642847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 12641957 - 12641850
Alignment:
| Q |
129 |
atgtgatgaatgaacaacatatggttgttagattttatagactgatattttgtaataaagacaaaaatattaaattggagacatgagggattgcatttct |
228 |
Q |
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|||||||| |||||||| ||||||| ||||||||||||| || | |||| |||||| || ||||||||||||||||||| ||||| | || ||||| |
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| T |
12641957 |
atgtgatgcatgaacaatatatggtcattagattttatagtctaaaatttagtaatatgga-aaaaatattaaattggagagatgagaaaatgtgtttct |
12641859 |
T |
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| Q |
229 |
tatcacaac |
237 |
Q |
| |
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||||||||| |
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| T |
12641858 |
tatcacaac |
12641850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 368
Target Start/End: Original strand, 3266170 - 3266291
Alignment:
| Q |
248 |
gtaagattggaattatagagatatttttccctcactacattaataaggatgtaattcaca-atatatacttgaaaatattcttcatactaccaattaatc |
346 |
Q |
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||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||| | ||| ||| ||||||||||| || ||| || ||||| ||| |
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| T |
3266170 |
gtaagattggaattaaagaaatattttttactcactacattaataaggatttaattcatatatacataattgaaaatattttttatattatcaatttatc |
3266269 |
T |
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| Q |
347 |
tttgccgtttgatcatagaaaa |
368 |
Q |
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||| | ||||||||||| |||| |
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| T |
3266270 |
tttactgtttgatcataaaaaa |
3266291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 3265904 - 3265858
Alignment:
| Q |
188 |
gacaaaaatattaaattggagacatgagggattgcatttcttatcac |
234 |
Q |
| |
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|||||||||||||||||||||| |||| ||||| |||||||||||| |
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| T |
3265904 |
gacaaaaatattaaattggagaaatgaaagattgaatttcttatcac |
3265858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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