View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11807_high_1 (Length: 658)
Name: NF11807_high_1
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11807_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 49695073 - 49694545
Alignment:
| Q |
1 |
agtgttttgaacttgacgaagaacttccccttctcgaacaagtgcctctgcgtgttactcccttcgctcatttgtctacttacgacgacgaagaagaaaa |
100 |
Q |
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| T |
49695073 |
agtgttttgaacttgacgaagaacttccccttctcgaacaagtgcctctgcgtgttactcccttcgctcatttgtctacttacgacgacgaagaggaaaa |
49694974 |
T |
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| Q |
101 |
cgaagatgatgacgaagaagatggtggtgaaatcatgaatgttgtgagagtaccggagaatgttgtcctcgcaccgagaattaaggtgctggacgttgaa |
200 |
Q |
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| T |
49694973 |
cgaagatgatgacgaagaagatggtggtgaaatcatgaatgttgtgagagtaccggagaatgttgtcctcgcaccgagaattaaggtgctggacgttgaa |
49694874 |
T |
|
| Q |
201 |
aaagaaaattctgattcaggttccgatgtttccattgatggagaaggtattggaataagaatagcttgtgatggagactctactgctactgcaactgatt |
300 |
Q |
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| T |
49694873 |
aaagaaaattctgattcaggttccgatgtttccattgatggagaaggtattggaataagagtagcttgtgatggagactctactgctactgcaactgatt |
49694774 |
T |
|
| Q |
301 |
ctgatgttatgtcgcagtattccagagatggtttggagaatgagcaatttgggaaggtaagtgttgcatttaatgaaattgaaaatgatgatatgaaatt |
400 |
Q |
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| T |
49694773 |
ctgatgttatgtcgcagtattccagagatggtttggagaatgagcaatttgggaaggtaagtgttgcatttaatgaaattgaaaatgatgatatgaaatt |
49694674 |
T |
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| Q |
401 |
atatggtttagatagagatgatggaattagggttgagttaattgagactgataatgtaatggaaagtaacttgcaagtggaaaacactgaaaccattgat |
500 |
Q |
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| T |
49694673 |
atatggtttagatagagatgatggaattagggatgagttaattgagactgataatgtaatggaaagtaacttgcaagtg---------gaaaccactgat |
49694583 |
T |
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| Q |
501 |
acggtggaagaaacttctaatgccaacaacttattgga |
538 |
Q |
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| T |
49694582 |
acggtggaagaaacttctaatgccaacaacttattgga |
49694545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 543 - 640
Target Start/End: Complemental strand, 49694564 - 49694467
Alignment:
| Q |
543 |
aatgccaagagcttattggaatttgatgttgagggttatgtcaacagcataatgctggagcataatacaagtgctggctatttagaacagaatcctga |
640 |
Q |
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| T |
49694564 |
aatgccaacaacttattggaatttgatgttgagggttatgtcaacagcataatgctggagcataatacaagtgctggctatttagaacagaatcctga |
49694467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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