View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11807_high_10 (Length: 315)
Name: NF11807_high_10
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11807_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 16209360 - 16209046
Alignment:
| Q |
1 |
ttttatattccatgataaattgataatgttgataaggaatatatttggtaaaggaataataaatgcatataataatttatattgagtcttatatttaacg |
100 |
Q |
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| T |
16209360 |
ttttatattccaagataaattgataatgttgataagcaatatatttggtaaaggaataataaatgcatataataatttatattgagtcttatatttaacg |
16209261 |
T |
|
| Q |
101 |
acaacnnnnnnnnnaaa-taattttataattaaggatagagggagtagtgttttctttaaagcaacccatttccttatttagggaaggtaggttgttcaa |
199 |
Q |
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| T |
16209260 |
acaaccattttattaaaatagttttataattaaggatagaaggagtagtgttttctttaaagcaactcatttccttatttagggaaggtaggttgttcaa |
16209161 |
T |
|
| Q |
200 |
gccatttttgaggatatgcaaagcctaattttgatcatgcaataccgaaattaagaaaacacaacgatccgacagaaactctagaagatatgtgtttaaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
16209160 |
gccatttttgaggatatgcaaagcctaattttgatcatgcaataccgaaattaagaaaacacaacgatccgacagaaactctagaagaaatgtgttgaaa |
16209061 |
T |
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| Q |
300 |
attcatctcactcga |
314 |
Q |
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||||||| ||||||| |
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| T |
16209060 |
attcatcacactcga |
16209046 |
T |
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