View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11807_high_5 (Length: 453)

Name: NF11807_high_5
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11807_high_5
NF11807_high_5
[»] chr1 (8 HSPs)
chr1 (1-330)||(45067683-45068012)
chr1 (217-435)||(45082921-45083139)
chr1 (172-435)||(45075451-45075709)
chr1 (364-423)||(45068021-45068080)
chr1 (221-322)||(45078620-45078721)
chr1 (4-64)||(45078476-45078536)
chr1 (3-145)||(45075245-45075384)
chr1 (390-422)||(45078769-45078801)
[»] chr7 (2 HSPs)
chr7 (219-329)||(34505293-34505403)
chr7 (374-435)||(34505450-34505511)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 45067683 - 45068012
Alignment:
Q  1 tgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttagcaatttagtccttgcaattgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  45067683 tgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggcaaaaatgggaaaaacaagaagtggttagcaatttagtccttgcaactgaa 45067782  T
Q  101 ccttttattcaatatcaatgacataaactccattaagttgaaaaataataattagaatttggacnnnnnnntctaaacgaatttctaaatgattgaatgt 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||    
T  45067783 ccttttattcaatatgaatgacataaactccattaagttgaaaaataataattagaatttggacaaaaaagtctaaactaatttctaaatgattgaatgt 45067882  T
Q  201 ctaatggaccatgaatacattaccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||    
T  45067883 ctaatggaccatgaatacattaccagggtctatgccatctgtgtttggaacgtccactggtgcaagaatagtaagtctatttataattatgttactgaag 45067982  T
Q  301 atataaagtttaatcagaagaatgaaataa 330  Q
    |||||||||||| ||||| |||| ||||||    
T  45067983 atataaagtttagtcagatgaataaaataa 45068012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 217 - 435
Target Start/End: Original strand, 45082921 - 45083139
Alignment:
Q  217 acattaccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagtttaatca 316  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45082921 acattacctgggtctatgccatctgtgtttggaacgtccactggtgcaagaattgtaagtccgtttataattatgttactgaagatataaagtttaatca 45083020  T
Q  317 gaagaatgaaataacacacacatatagaaaataatgctttaaataaagttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggac 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||||||| |||||| ||    
T  45083021 gaagaatgaaataacacacacatatagaaaataatgctttaaataaagttgagaaatttaaaaattgtgactcgtcaaacctgctgtaaactggatgtac 45083120  T
Q  417 aaaccaaaaaggggaattg 435  Q
    ||||||| |||||||||||    
T  45083121 aaaccaagaaggggaattg 45083139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 435
Target Start/End: Original strand, 45075451 - 45075709
Alignment:
Q  172 tctaaacgaatttctaaatgattgaatgtctaatggaccatgaatacatt-accagggtctatgccatctgtgtttggaacgtccactggtgccagaatt 270  Q
    ||||||| |||||||||||||||| || || ||  |||||  |||||||| ||| |||||||||||||| ||||| |||| ||| |||||||| ||||||    
T  45075451 tctaaactaatttctaaatgattgtatatcaaactgaccaaaaatacatttacctgggtctatgccatccgtgttaggaatgtcgactggtgcaagaatt 45075550  T
Q  271 gtaagtccgtttataattatgttac-------tgaagatataaagtttaatcagaagaatgaaataacacacacatatagaaaataatgctttaaataaa 363  Q
    |||||||| ||||||||||||||||       ||||||||||||||||| ||||| ||| ||||||| | | ||   |||||           ||||||     
T  45075551 gtaagtccatttataattatgttactgaagaatgaagatataaagtttagtcagatgaacgaaataatatatac--ttagaa-----------aaataag 45075637  T
Q  364 gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaaaaaggggaattg 435  Q
    ||||| ||||||||| |||| |||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  45075638 gttgaaaaatttgaagatggtgactaatcaaacctgctgtaaactggatggacaaaccaagaaggggaattg 45075709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 364 - 423
Target Start/End: Original strand, 45068021 - 45068080
Alignment:
Q  364 gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaa 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45068021 gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaa 45068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 45078620 - 45078721
Alignment:
Q  221 taccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcagaag 320  Q
    |||| |||| ||| |||||||||||||||  ||| |||||||| ||||| |||||||| |||||||||||||||||| ||| || ||| || ||||||||    
T  45078620 tacctgggtttattccatctgtgtttggagagtctactggtgcaagaatggtaagtccatttataattatgttactgcagaaatgaagcttgatcagaag 45078719  T
Q  321 aa 322  Q
    ||    
T  45078720 aa 45078721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 45078476 - 45078536
Alignment:
Q  4 agttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaa 64  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||    
T  45078476 agttgtcttcaattctaacgtttgtacatgagtctgttaagaaggggaaaaatgggaaaaa 45078536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 45075245 - 45075384
Alignment:
Q  3 tagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttagcaatttagtccttgcaattgaacc 102  Q
    |||||||||||||||   ||||||||||| || |||| |||| |   ||||||  ||||||||||||| ||||  | |||||| ||||||||||||| ||    
T  45075245 tagttgtcttcaattctgacgtttgtacatgaatctggtaagta---aaaaaaatggaaaaacaagaagtggtcggtaatttactccttgcaattgagcc 45075341  T
Q  103 ttttattcaatatcaatgacataaactccattaagttgaaaaa 145  Q
    | || |||| ||| || | |||||  |||||| ||||| ||||    
T  45075342 tcttgttcagtatgaaggtcataagttccatttagttggaaaa 45075384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 45078769 - 45078801
Alignment:
Q  390 atcaaacctgctgtaaattggatggacaaacca 422  Q
    |||||||||||||||||||||||| ||||||||    
T  45078769 atcaaacctgctgtaaattggatgaacaaacca 45078801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 219 - 329
Target Start/End: Original strand, 34505293 - 34505403
Alignment:
Q  219 attaccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcaga 318  Q
    |||||| |||||||| |||||||||||||||  ||| |||||||| ||||| ||||| || |||||||||||||||||||||| |||||| || |||| |    
T  34505293 attacctgggtctattccatctgtgtttggagagtctactggtgcaagaatggtaagaccctttataattatgttactgaagaaataaagcttgatcaaa 34505392  T
Q  319 agaatgaaata 329  Q
    |||||||||||    
T  34505393 agaatgaaata 34505403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 435
Target Start/End: Original strand, 34505450 - 34505511
Alignment:
Q  374 ttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaaaaaggggaattg 435  Q
    |||||||||| |  | |||||||||||||||| ||||||||||||||||| |||||||||||    
T  34505450 ttgaaaatggtgcattatcaaacctgctgtaagttggatggacaaaccaagaaggggaattg 34505511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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