View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11807_low_10 (Length: 377)
Name: NF11807_low_10
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11807_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 42119835 - 42119467
Alignment:
| Q |
1 |
acctctatttactttaaagtgttcacattcatcatataagattggannnnnnnnnnnnggaatgtaagactcaagttttttatacaatcataagattgaa |
100 |
Q |
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| T |
42119835 |
acctctatttactttaaagtgttcacattcatcatataagattggatttttattttttggaatgtaagactcaagttttttatacaatcataagattgaa |
42119736 |
T |
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| Q |
101 |
attgcaaacagatggata-------tacacacatcattattattgaatttgattgagaatgcttgcgtaaaaaagaggtttgaggatatacatacaca-- |
191 |
Q |
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| T |
42119735 |
attgcaaacagatggatacacacactacacacatcattattattgaatttgattgagaatgcttgcgtaaaatagaggtttgaggatatacatacacata |
42119636 |
T |
|
| Q |
192 |
attgtttttcatggtaaaataaacacaatattattcacaccacaatatgattctcattcgatttttcccattgatatcacacaattataggaaaaaataa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42119635 |
attgtttttcatggtaaaataaacacaatattattcacaccacaatatgattctcattcgatttttcccattgatatcacacaattataggaaaaaataa |
42119536 |
T |
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| Q |
292 |
ctctacaaattaagatccaacatttttgttacttaaaagatatcaacacgagaaaattcagagaaaaat |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42119535 |
ctctacaaattaagatccaacatttttgttacttaaaagatatcaacacgagaaaattcagagaaaaat |
42119467 |
T |
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