View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11807_low_11 (Length: 333)
Name: NF11807_low_11
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11807_low_11 |
 | |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
| [»] scaffold1809 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 41560076 - 41559761
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41560076 |
atattagaaagacaaacattaaatgagagttaaaaaagtcttttaaatcataaatgtatcttaaaaattatgattttttcttatatattggaccaaattt |
41559977 |
T |
|
| Q |
101 |
tttattgaaaattttcctataaataacaccggagggagtatatgatatttagaatgaaattattgagaaaaattgaagtcctagagacgcaccaatccac |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41559976 |
tttattgaaaatttttctataaataacaccggagggagtatatgatatttagaatgaaattattgagaaaaattgaagtcct--agacgcaccaatccac |
41559879 |
T |
|
| Q |
201 |
gtggccgtgtatggcacaaggcaattaaggcatgtgtcattttgtgtagcaatgataccatatacgtatatatatatannnnnnnnnnagtatatgtcat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
41559878 |
gtggccgtgtatggcacaaggcaattaaggcatgtgtcattttctgtagcaatgataccat-tacgtatatatatat------tttttagtatatgtcat |
41559786 |
T |
|
| Q |
301 |
gtatcataatgtctaatatatcaat |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
41559785 |
gtatcataatgtctaatatatcaat |
41559761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 49983645 - 49983522
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||| || ||| ||||||||||||| | || | ||||| |
|
|
| T |
49983645 |
atattaaaaagacaaacattaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaagttgtgactttttcttatatatttgatc-aattt |
49983547 |
T |
|
| Q |
101 |
tttattgaaaattttcctataaata |
125 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
49983546 |
ttttttgaaaattttcctataaata |
49983522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 30041365 - 30041485
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattt |
100 |
Q |
| |
|
|||||| ||||||||||||||| | ||| ||| |||||||||||||| |||||| |||||| ||| || | | ||||||| ||||| ||||||||| |
|
|
| T |
30041365 |
atattaaaaagacaaacattaattaagggttagaaaagtcttttaaacaataaatatacctt-aaagttgtcactttttctaatatattggaccaaaaaa |
30041463 |
T |
|
| Q |
101 |
tttattgaaaattttcctataa |
122 |
Q |
| |
|
|| |||||||||||| ||||| |
|
|
| T |
30041464 |
atttttgaaaattttcttataa |
30041485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 32211848 - 32211988
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattt |
100 |
Q |
| |
|
|||||| ||||||||||||||||| | | || |||||||||||||| |||| | ||||||||| || ||| |||||||||| | |||||| | |
|
|
| T |
32211848 |
atattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttataaataagaccaacaat |
32211947 |
T |
|
| Q |
101 |
tttattgaaaattttcctataaataacaccggagggagtat |
141 |
Q |
| |
|
||| |||||||||||| |||| ||| |||||||||||||| |
|
|
| T |
32211948 |
ttttttgaaaattttcttatatataggaccggagggagtat |
32211988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 27442436 - 27442554
Alignment:
| Q |
7 |
gaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttatt |
106 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||| ||||| ||| |||||| || ||||||||||||||| | ||||||| |||||| || |
|
|
| T |
27442436 |
gaaagaccaacattaaatgagggttagaaaagtcttttaaacactaaatatactttaaaagttgtgattttttcttataaataggaccaagttttttttt |
27442535 |
T |
|
| Q |
107 |
gaaaattttcctataaata |
125 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
27442536 |
gaaaattttcttataaata |
27442554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 17971428 - 17971560
Alignment:
| Q |
8 |
aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattg |
107 |
Q |
| |
|
|||||| |||||||||||||| ||| |||||||||||||| |||||| |||||||||| || ||| ||||||||||| | |||||||| ||| ||| |
|
|
| T |
17971428 |
aaagaccaacattaaatgagggttagaaaagtcttttaaacaataaatataccttaaaagttgtgactttttcttataaataggaccaaaacgttttttg |
17971527 |
T |
|
| Q |
108 |
aaaattttcctataaataacaccggagggagta |
140 |
Q |
| |
|
||||||||| |||| ||| ||| ||||||||| |
|
|
| T |
17971528 |
aaaattttcttatatataggaccagagggagta |
17971560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 28724023 - 28724146
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattt |
100 |
Q |
| |
|
|||||| ||||| ||||||||| ||||| ||| ||||||||||||||| ||||||| || || ||| || ||| ||||||||||||| |||||||| ||| |
|
|
| T |
28724023 |
atattaaaaagataaacattaattgagggttagaaaagtcttttaaataataaatgcacatt-aaagttgtgactttttcttatatattggaccaatttt |
28724121 |
T |
|
| Q |
101 |
tttattgaaaattttcctataaata |
125 |
Q |
| |
|
||| || |||| |||| ||||||| |
|
|
| T |
28724122 |
ttttttaaaaagtttctaataaata |
28724146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 32715767 - 32715643
Alignment:
| Q |
15 |
aacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattgaaaattt |
114 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| ||||||| ||||||||| || ||| ||||||||||| | |||||||||||||| | ||||||| |
|
|
| T |
32715767 |
aacattaaatgagggctagaaaagacttttaaacaataaatg-accttaaaatttgtgactttttcttataaataggaccaaattttttttaaaaaattt |
32715669 |
T |
|
| Q |
115 |
tcctataaataacaccggagggagta |
140 |
Q |
| |
|
| |||| ||| ||||||||||||| |
|
|
| T |
32715668 |
tgttatatataggaccggagggagta |
32715643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 36437259 - 36437378
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattt |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |||||||||||||||| |||| | | |||||||| || ||| |||||||||| | |||||||| | |
|
|
| T |
36437259 |
atattaaaaagacagacattaaatgagggataaaaaagtcttttaagcaataactat-ccttaaaagttgtgacattttcttataaataggaccaaaact |
36437357 |
T |
|
| Q |
101 |
tttattgaaaattttcctata |
121 |
Q |
| |
|
||| |||||||||||| |||| |
|
|
| T |
36437358 |
ttttttgaaaattttcttata |
36437378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 31405034 - 31404938
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaat |
98 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
31405034 |
atattaaaaagacaaatattaaatgagggttagaaaagtcttttaaaaaataaatgtaccttaaaaa-tatgactttttcttatattttggaccaaat |
31404938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 32872430 - 32872290
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattt |
100 |
Q |
| |
|
|||||| || |||||||||||||| ||| || |||||||||||||| ||||||||| ||||||| | | | ||||||||||||| | ||||||| || |
|
|
| T |
32872430 |
atattaaaaggacaaacattaaattagggttggaaaagtcttttaaacaataaatgtaacttaaaagtcacaactttttcttatatatttgaccaaagtt |
32872331 |
T |
|
| Q |
101 |
tttattgaaaattttcctataaataacaccggagggagtat |
141 |
Q |
| |
|
||| ||||||| |||| |||||||| |||||| ||||||| |
|
|
| T |
32872330 |
ttttttgaaaaatttcttataaataggaccggaaggagtat |
32872290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 7011167 - 7011043
Alignment:
| Q |
18 |
attaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaatt-ttttattgaaaattttc |
116 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||||||| |||||||||| ||| ||||||||||| | | | ||| || |||| || ||||||||| |
|
|
| T |
7011167 |
attaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaaattgtgactttttcttataaatagaatcaatttattttttttaaaattttc |
7011068 |
T |
|
| Q |
117 |
ctataaataacaccggagggagtat |
141 |
Q |
| |
|
|||||||| |||||| ||||||| |
|
|
| T |
7011067 |
ttataaataggaccggatggagtat |
7011043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 14200440 - 14200491
Alignment:
| Q |
15 |
aacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaa |
66 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
14200440 |
aacattaaatgagggttaaaaaagtcttttaaataataaatgtatcttaaaa |
14200491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 38214202 - 38214080
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacc-aaatt |
99 |
Q |
| |
|
|||||| ||||| || ||||||||||| || |||||||||||||| |||||| ||||||||| || ||| ||||||||||| | |||||| ||||| |
|
|
| T |
38214202 |
atattaaaaagagaagtattaaatgagggatataaaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggaccaaaatt |
38214103 |
T |
|
| Q |
100 |
ttttattgaaaattttcctataa |
122 |
Q |
| |
|
|||| |||||| ||||| ||||| |
|
|
| T |
38214102 |
tttttttgaaatttttcttataa |
38214080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34262798 - 34262733
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaa |
66 |
Q |
| |
|
|||||| ||||||||||||||| ||||| ||| |||||||||||||| ||||||| ||||||||| |
|
|
| T |
34262798 |
atattaaaaagacaaacattaattgagggttagaaaagtcttttaaacaataaatgaaccttaaaa |
34262733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 39063653 - 39063793
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattt |
100 |
Q |
| |
|
|||||| ||||| || |||||||||| | || |||||||||||||| |||||| ||||||||| || ||| ||||||||||| | |||||||| ||| |
|
|
| T |
39063653 |
atattaaaaagagaagtattaaatgagcaatataaaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggaccaatttt |
39063752 |
T |
|
| Q |
101 |
-tttattgaaaattttcctataaataacaccggagggagta |
140 |
Q |
| |
|
||| || ||||||||| ||||| | ||||||||||||| |
|
|
| T |
39063753 |
atttttttaaaattttcttataataaggaccggagggagta |
39063793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17368930 - 17368974
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtctttta |
45 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
17368930 |
atattaaaaagacaaacattaaataaggactaaaaaagtctttta |
17368974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 38496562 - 38496420
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattt |
100 |
Q |
| |
|
|||||| ||| |||||| |||||| ||| || ||| |||||||||| |||| | ||||||||||||| ||| |||||||||| | |||| || | |
|
|
| T |
38496562 |
atattaaaaatacaaacgttaaataaggggtagaaaggtcttttaaacaataactataccttaaaaattctgacattttcttataaataggactaacata |
38496463 |
T |
|
| Q |
101 |
tttattgaaaattttcctataaataacaccggagggagtatat |
143 |
Q |
| |
|
||| |||||||||||| |||| ||| | |||||||||||||| |
|
|
| T |
38496462 |
ttttttgaaaattttcttatatataggatcggagggagtatat |
38496420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 19780313 - 19780181
Alignment:
| Q |
8 |
aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattg |
107 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||||||| |||||| || ||||||| || | ||||||||||||| |||||||||||||| ||| |
|
|
| T |
19780313 |
aaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatataggaccaaatttttttttg |
19780214 |
T |
|
| Q |
108 |
aaaattttcctataaataacaccggagggagta |
140 |
Q |
| |
|
||||||||| |||| ||| | ||||||||||| |
|
|
| T |
19780213 |
aaaattttcttatatatagaatcggagggagta |
19780181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 9425574 - 9425440
Alignment:
| Q |
8 |
aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttctt---atatactggaccaaatttttta |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||| ||||| |||| || ||||||||| || ||| | |||| ||| ||| || |
|
|
| T |
9425574 |
aaagataaacattaaatgaggattaaaaaagtcttttaaacaataaatatacctcaaaagttgtgattttttttttttataaattggatcaattttgtt- |
9425476 |
T |
|
| Q |
105 |
ttgaaaattttcctataaataacaccggagggagta |
140 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
9425475 |
ttgaaaattttgttataaataagacctgagggagta |
9425440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6657967 - 6657903
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaa |
65 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
6657967 |
atattaaaaagacaaacattaaatgagggttagaaaagtcatttaaacaataaatgtaccttaaa |
6657903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 180429 - 180345
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata |
85 |
Q |
| |
|
|||||| ||||||||||||||||| ||| || ||||||||||||| |||| | | |||||||||| |||| |||||||||| |
|
|
| T |
180429 |
atattaaaaagacaaacattaaataaggggtataaaagtcttttaagcaataactacatcttaaaaattgtgatattttcttata |
180345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 41508189 - 41508075
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattt |
100 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||||||||||||||| |||| | |||||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
41508189 |
atattaaaaagacaaacattaaataaggggtaaaaaagtcttttaagcaataactacaccttaaaaattgtgatattttcttatatttaggaccaaattt |
41508090 |
T |
|
| Q |
101 |
tttattgaaaatttt |
115 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
41508089 |
ttttttgaaaatttt |
41508075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 42935536 - 42935403
Alignment:
| Q |
8 |
aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattg |
107 |
Q |
| |
|
|||||| ||||||||||||| |||| |||| ||||||||| ||||||||| || |||| || ||| ||||||||||| | | |||||| | ||| |
|
|
| T |
42935536 |
aaagaccaacattaaatgagaattagaaaaatcttttaaacaataaatgtatctcaaaagttgtgactttttcttataaatagaaccaaaaaaaattttg |
42935437 |
T |
|
| Q |
108 |
aaaattttcctataaataacaccggagggagtat |
141 |
Q |
| |
|
||||||||| |||| |||| |||||||||||||| |
|
|
| T |
42935436 |
aaaattttcttatatataagaccggagggagtat |
42935403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 10599810 - 10599949
Alignment:
| Q |
2 |
tattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaatttt |
101 |
Q |
| |
|
||||| ||||| ||||||||||||| | ||| |||||| ||| ||| |||||||||||| |||| || ||| ||||||||||| | |||| | |||| |
|
|
| T |
10599810 |
tattaaaaagataaacattaaatgaaggttagaaaagtttttcaaacaataaatgtacctcaaaagttgtgactttttcttataaataggacaatttttt |
10599909 |
T |
|
| Q |
102 |
ttattgaaaattttcctataaataacaccggagggagtat |
141 |
Q |
| |
|
|| || ||||||||| ||||||| ||||||| |||||| |
|
|
| T |
10599910 |
tttttaaaaattttcttataaatgggaccggagtgagtat |
10599949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 14568439 - 14568350
Alignment:
| Q |
8 |
aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaa |
97 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||||||| |||||| || ||||||| || | ||||||||||||| |||||||| |
|
|
| T |
14568439 |
aaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatataggaccaaa |
14568350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 14658834 - 14658917
Alignment:
| Q |
2 |
tattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatga-ttttttcttata |
85 |
Q |
| |
|
||||| ||||| |||||||||| ||||||| ||||||||||||| || ||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
14658834 |
tattaaaaagataaacattaaacgaggattgaaaaagtcttttacatagtaaatacacctt-aaaattatgacttttttcttata |
14658917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35333372 - 35333328
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtctttta |
45 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
35333372 |
atattaaaaagacaaacattaaatgagggttaaaaaaatctttta |
35333328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 2195879 - 2195808
Alignment:
| Q |
16 |
acattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatata |
87 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||| | ||||||||| ||||||| |||||||||||| |
|
|
| T |
2195879 |
acattaaatgaagagtagaaaagtcttttaaacaataactacaccttaaaagttatgatattttcttatata |
2195808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 17757477 - 17757554
Alignment:
| Q |
8 |
aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata |
85 |
Q |
| |
|
|||||| | |||||||| ||| ||||||| ||||||||| ||||||||||||||||| || || ||||||||||| |
|
|
| T |
17757477 |
aaagaccaccattaaattagggttaaaaatgtcttttaagcaataaatgtaccttaaaagttgtgtctttttcttata |
17757554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 36408244 - 36408368
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaa-tt |
99 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||||||| | ||||| ||||||||||||| ||| || ||| ||||||||||||| ||||||| || |
|
|
| T |
36408244 |
atattaaaaagacaaacattaaacgagggttaaaaaagtttgttaaacaataaatgtacctt-aaagttgtgactttttcttatatataagaccaaagtt |
36408342 |
T |
|
| Q |
100 |
ttttattgaaaattttcctataaata |
125 |
Q |
| |
|
|||| |||||||||||| |||||||| |
|
|
| T |
36408343 |
tttttttgaaaattttcttataaata |
36408368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 38209585 - 38209711
Alignment:
| Q |
8 |
aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattg |
107 |
Q |
| |
|
|||||| |||||||||||||| ||| | |||||||||||| ||||||||||||||||| || ||| ||||||||||| | ||||||||||||| || |
|
|
| T |
38209585 |
aaagaccaacattaaatgagggttagagaagtcttttaaacaataaatgtaccttaaaagttgtgactttttcttataaatatgaccaaattttttttt- |
38209683 |
T |
|
| Q |
108 |
aaaattttcctataaataacaccggaggg |
136 |
Q |
| |
|
|||||||| |||| ||| ||||||||| |
|
|
| T |
38209684 |
-aaattttcttatatataggaccggaggg |
38209711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 36054905 - 36054785
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattt |
100 |
Q |
| |
|
|||||| ||||||||||||||| | ||| || |||||||||||||| |||||| |||||||||| || ||| |||||||||| | |||||||| | |
|
|
| T |
36054905 |
atattaaaaagacaaacattaattaaggggtataaaagtcttttaaacaataaatataccttaaaagttgtgacattttcttataaataggaccaaaaat |
36054806 |
T |
|
| Q |
101 |
tttattgaaaattttcctata |
121 |
Q |
| |
|
| | |||||||||||| |||| |
|
|
| T |
36054805 |
tattttgaaaattttcttata |
36054785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 4641086 - 4641024
Alignment:
| Q |
75 |
tttttcttatatactggaccaaatt-ttttattgaaaattttcctataaataacaccggaggg |
136 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
4641086 |
tttttcttatatattggaccaaattttttttttgaaaattttcttataaataggaccggaggg |
4641024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 31658941 - 31658800
Alignment:
| Q |
2 |
tattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaa-attt |
100 |
Q |
| |
|
||||| ||||||||||||||||| | | |||||||||||||||||| |||| | | ||||||| || |||| |||||||||| | | ||||| | || |
|
|
| T |
31658941 |
tattaaaaagacaaacattaaataaaggttaaaaaagtcttttaaacaataactacatcttaaaagttgtgatattttcttataaatagaaccaacaatt |
31658842 |
T |
|
| Q |
101 |
tttattgaaaattttcctataaataacaccggagggagtata |
142 |
Q |
| |
|
||| || ||||||||| |||| |||| |||||| | |||||| |
|
|
| T |
31658841 |
ttttttaaaaattttcttatatataagaccggatgaagtata |
31658800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11778127 - 11778083
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtctttta |
45 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
11778127 |
atattaaaaagacaaacattaaataagggttaagaaagtctttta |
11778083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 54863999 - 54863874
Alignment:
| Q |
15 |
aacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaa--attttttattgaaaat |
112 |
Q |
| |
|
||||||||||||| ||| ||||| |||||||| ||||||||||||||||| || ||| ||||||||||| | ||||||| |||||| |||||||| |
|
|
| T |
54863999 |
aacattaaatgagagttagaaaagccttttaaacaataaatgtaccttaaaagttgtgactttttcttataaataggaccaattttttttttttgaaaat |
54863900 |
T |
|
| Q |
113 |
tttcctataaataacaccggagggag |
138 |
Q |
| |
|
|||| |||||||| ||||||||||| |
|
|
| T |
54863899 |
tttcttataaatagaaccggagggag |
54863874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 21128178 - 21128101
Alignment:
| Q |
8 |
aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata |
85 |
Q |
| |
|
||||| |||||| |||||||| || |||||||||||||| |||||| ||| |||||| |||||| |||||||||| |
|
|
| T |
21128178 |
aaagataaacataaaatgagggttggaaaagtcttttaaaaaataaatatacattaaaagttatgacattttcttata |
21128101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 18705088 - 18704968
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattt |
100 |
Q |
| |
|
|||||| ||| | ||||||||||| | | |||||||||||||||| | |||| | ||||||||| ||||||| |||||||||| ||||||||| | |
|
|
| T |
18705088 |
atattaaaaacaaaaacattaaataaagggtaaaaaagtcttttaagtaataactacaccttaaaagttatgatgttttcttataatttggaccaaagat |
18704989 |
T |
|
| Q |
101 |
tttattgaaaattttcctata |
121 |
Q |
| |
|
||| |||||||||||| |||| |
|
|
| T |
18704988 |
ttttttgaaaattttcttata |
18704968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 17686308 - 17686237
Alignment:
| Q |
15 |
aacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatga-ttttttcttata |
85 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| || ||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
17686308 |
aacattaaaggaggattgaaaaagtcttttatatagtaaatacaccttaaaagttatgacttttttcttata |
17686237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 68887 - 68841
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaa |
47 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
68887 |
atattaaaacgacaaacattaaatgaggaataaaaaagtcttttaaa |
68841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 38931 - 39031
Alignment:
| Q |
41 |
ttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattgaaaattttcctat-aaataacaccggagggagt |
139 |
Q |
| |
|
||||||| |||||| || |||||||||| ||| ||||||||||| | ||||||| ||||| |||| ||||||| ||| |||||| |||||||||||| |
|
|
| T |
38931 |
ttttaaacaataaatatatcttaaaaattgtgactttttcttataaataagaccaaacttttt-ttgagaattttcttataaaataagaccggagggagt |
39029 |
T |
|
| Q |
140 |
at |
141 |
Q |
| |
|
|| |
|
|
| T |
39030 |
at |
39031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1809 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1809
Description:
Target: scaffold1809; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 556 - 640
Alignment:
| Q |
1 |
atattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata |
85 |
Q |
| |
|
|||||| || ||||| |||||||||||| ||||||||||||||||| |||| | |||||||| || ||| ||||||||||| |
|
|
| T |
556 |
atattaaaacgacaatcattaaatgagggataaaaaagtcttttaaacaataactacaccttaaatgttgtgactttttcttata |
640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University