View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11807_low_12 (Length: 321)
Name: NF11807_low_12
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11807_low_12 |
 | |
|
| [»] scaffold0095 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 39378151 - 39378451
Alignment:
| Q |
12 |
agtgttaacattaatcttcaacacaacatgatcgtaggaacaagagatgatcaaagatttcgtgcaattgatgggagtgttgtcaacattaatcagaaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39378151 |
agtgttaacattaatcttcaacacaacatgatcgtaggaacaagagatgatcaaagatttcgtgcaattgatgggagtgttgtcaatattaatcagaaac |
39378250 |
T |
|
| Q |
112 |
acaacacgaccgcaggaactagagagagtgacatagggattagttcaagccatgagataaagaatgcaaagcttcaagattttcttggatcaagtgactc |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
39378251 |
acaacacgactgcaggaactagagagagtgacatagggattagttcaagccatgagataaagaatgcaaagcttcaagattttcttagatcaagtgacac |
39378350 |
T |
|
| Q |
212 |
attaaggctaacattgagtgcattaaatgcaaaattatcatcttttcgaggctggccgagtatgaacaaaaattggtttgcactttacaagatgcctttg |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39378351 |
attaaggctaacattgagtgcattaaatgcaaaattatcatcttttcgaggttggccgaatatgaacaaaaattggtttgcactttacaagatgcctttg |
39378450 |
T |
|
| Q |
312 |
c |
312 |
Q |
| |
|
| |
|
|
| T |
39378451 |
c |
39378451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 30 - 278
Target Start/End: Original strand, 39395526 - 39395775
Alignment:
| Q |
30 |
caacacaacatgatcgtaggaacaagagatgatcaaagatttcgtgcaattgatgggagtgttgtcaacattaatcagaaacacaacacgaccgcaggaa |
129 |
Q |
| |
|
||||| || ||||||| ||||||||||||||||| || || | |||||||||||||||| |||||||| ||| ||||| |||||||||| |||||||||| |
|
|
| T |
39395526 |
caacataaaatgatcgcaggaacaagagatgatcgaaaatctggtgcaattgatgggagagttgtcaatattgatcagcaacacaacacaaccgcaggaa |
39395625 |
T |
|
| Q |
130 |
ctagagagagtgacatag-ggattagttcaagccatgagataaagaatgcaaagcttcaagattttcttggatcaagtgactcattaaggctaacattga |
228 |
Q |
| |
|
|| |||||| | |||| | |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| | |||| ||||||||||| |
|
|
| T |
39395626 |
ctggagagaattacatcgcggattagttcaaaccatgagataaagaatgcaaagcttcaagactttcttagatcaagtgacacgttaatgctaacattga |
39395725 |
T |
|
| Q |
229 |
gtgcattaaatgcaaaattatcatcttttcgaggctggccgagtatgaac |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||| | ||||||| |
|
|
| T |
39395726 |
gtgcattaaatgcaaaattatcatcttttccaggttggcccaatatgaac |
39395775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 39055 - 38992
Alignment:
| Q |
250 |
catcttttcgaggct-ggccgagtatgaacaaaaattggtttgcactttacaagatgcctttgc |
312 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39055 |
catcttttcgaggtttggccgcatatgaacaaaaattggtttgcactatacaagatgcctttgc |
38992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University