View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11807_low_18 (Length: 249)
Name: NF11807_low_18
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11807_low_18 |
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| [»] scaffold0073 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 7085847 - 7086088
Alignment:
| Q |
1 |
acacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcatcacatgcttgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7085847 |
acacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaatctgttactcatcacatgcttgtc |
7085946 |
T |
|
| Q |
101 |
tagctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgtagtgaattatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7085947 |
tagctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgtagtgaattatt |
7086046 |
T |
|
| Q |
201 |
ggtggcctgaatgaatgatgcaaatgtgcaagtccctatgct |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7086047 |
ggtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
7086088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7045239 - 7044998
Alignment:
| Q |
1 |
acacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcatcacatgcttgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7045239 |
acacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacatagcctaatgcactttgaaacctgttactcatcacatgcttgtc |
7045140 |
T |
|
| Q |
101 |
tagctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgtagtgaattatc |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7045139 |
tagctttgataatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgcagtgaattatt |
7045040 |
T |
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| Q |
201 |
ggtggcctgaatgaatgatgcaaatgtgcaagtccctatgct |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7045039 |
ggtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
7044998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7000942 - 7000701
Alignment:
| Q |
1 |
acacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcatcacatgcttgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7000942 |
acacatcacatttctcattgacccttaagatttgacaggctagttctggtgctacataacctaaagcactttgaaacctgttactcatcacatgcttgtc |
7000843 |
T |
|
| Q |
101 |
tagctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgtagtgaattatc |
200 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
7000842 |
tagctttgttaatagcctagctaacccgaaatctgatatctttgcgttgaagttttcgtcaagtaagatgttgcttggttttatgttgtagtgaatgatt |
7000743 |
T |
|
| Q |
201 |
ggtggcctgaatgaatgatgcaaatgtgcaagtccctatgct |
242 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
7000742 |
ggtggtctgaatgaatgatgcaaatgtgcaagtccctttgct |
7000701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7046813 - 7046572
Alignment:
| Q |
1 |
acacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcatcacatgcttgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7046813 |
acacatcacatttctcattgacccttaagatttgacaggctagttctggtgctacataacctaaagcactttgaaacctgttactcatcacatgcttgtc |
7046714 |
T |
|
| Q |
101 |
tagctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgtagtgaattatc |
200 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
7046713 |
tagctttgttaatagcctagctaacccgaaatctgatatctttgcgttgaagttttcgtcaagtaagatgttgcttggttttatgttgtagtgaatgatt |
7046614 |
T |
|
| Q |
201 |
ggtggcctgaatgaatgatgcaaatgtgcaagtccctatgct |
242 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
7046613 |
ggtggtctgaatgaatgatgcaaatgtgcaagtccctttgct |
7046572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 6995555 - 6995609
Alignment:
| Q |
18 |
ttgacccttaagctctgacaagctagttcaggtgctacataacctaatgcacttt |
72 |
Q |
| |
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|||||||||||||||||||||| || ||||| || |||||| |||||||||||| |
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| T |
6995555 |
ttgacccttaagctctgacaagataattcagtggccacataatctaatgcacttt |
6995609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14072 - 13831
Alignment:
| Q |
1 |
acacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcatcacatgcttgtc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14072 |
acacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacatagcctaatgcactttgaaacctgttactcatcacatgcttgtc |
13973 |
T |
|
| Q |
101 |
tagctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgtagtgaattatc |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13972 |
tagctttgataatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgcagtgaattatt |
13873 |
T |
|
| Q |
201 |
ggtggcctgaatgaatgatgcaaatgtgcaagtccctatgct |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13872 |
ggtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
13831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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