View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11807_low_22 (Length: 238)
Name: NF11807_low_22
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11807_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 41560398 - 41560579
Alignment:
| Q |
43 |
agcctttcctattccttcaagttaccactccctcacagaacctgatgatattgttgatgttacagaggagcttgcagcttccatctcagtcattgatttc |
142 |
Q |
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| T |
41560398 |
agcctttcctattccttcaagttaccactccctcgcagaacctgatgatattgttgatgttacagaggagcttgcagcttccatcccagtcattgatttc |
41560497 |
T |
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| Q |
143 |
tctctcctaacttcagatgacctcgaaatccacacaaaggctgttcatgaactcgccaaagcatgttctgaatggggtttct |
224 |
Q |
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| T |
41560498 |
tctctcctaacctcagatgacctcaaaatccacacaaaggctgttcatgaaatcgccaaagcatgttctgaatggggtttct |
41560579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41555704 - 41555927
Alignment:
| Q |
1 |
atcaaatatttcaagtatcaaatcctttgcacaatcaaacggagcctttcctattccttcaagttaccactccctcacagaacctgatgatattgttgat |
100 |
Q |
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| T |
41555704 |
atcaaatatttcaagcatcaaagcctttgcggaatcaaatggaacctctctcattccttccaattaccactccctcacagaacatggtgatattattgat |
41555803 |
T |
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| Q |
101 |
gttacagaggagcttgcagcttccatctcagtcattgatttctctctcctaacttcagatgacctcgaaatccacacaaaggctgttcatgaactcgcca |
200 |
Q |
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||| |||| ||| |||||||||||||| || |||||||||||||||| || ||||||||||||| ||||||||||||| |||||||||||||| |||| |
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| T |
41555804 |
gttgcagatgagattgcagcttccatcccaatcattgatttctctctgctcacttcagatgaccctcaaatccacacaaaagctgttcatgaactagcca |
41555903 |
T |
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| Q |
201 |
aagcatgttctgaatggggtttct |
224 |
Q |
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| T |
41555904 |
aggcatgttctgaatggggtttct |
41555927 |
T |
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