View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11807_low_3 (Length: 627)
Name: NF11807_low_3
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11807_low_3 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Original strand, 1575 - 2202
Alignment:
| Q |
1 |
tcaaaactattaatcttttctttaatactacctcatccagaaaaaacatatacaaaatgcccatattcgcatatatgttcagcaagacaatgcagtttga |
100 |
Q |
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| T |
1575 |
tcaaaactattaatcttttctttaatactacctcatccagaaaaaacatatacaaaatgcccatattcgcatatatgatcagcaagacaatgcagtttga |
1674 |
T |
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| Q |
101 |
aagttagaaaaagatgacaattaatccgtccatggtgtgtatagagttaatggagcttgatactgccaccaaaggacacggggaaccagagagtcatctg |
200 |
Q |
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| T |
1675 |
aagttagaaaaagatgacaattaatccgtccatggtgtgtatagagttaatggagcttgatactgccaccaaaggacacggggaaccagagagtcatctg |
1774 |
T |
|
| Q |
201 |
gcgagctaaaataccgcccaaatttaagaactttacgtggaggaattgattgccttccggatcatggttacaatctaatggtgttaattgtgatacaaac |
300 |
Q |
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| T |
1775 |
gcgagctaaaataccgcccaaatttaagaactttacgtggaggaattgattgccttccggatcatggttacaatctaatggtgttaattgtgatacaaac |
1874 |
T |
|
| Q |
301 |
aatgctttatgcgactgacaagagcatatttttcataacatatttatgtgtggcaaaagcaagagaggatgacacctcgtaggactttggaatgctattg |
400 |
Q |
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| T |
1875 |
aatgctttatgcgactgacaagagcatatttttcataacatatttatgtgtgacaaaagcaagagaggatgacacctcgtaggactttggaatgctattg |
1974 |
T |
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| Q |
401 |
aacaagttctcaacacgaacaacaacatatctcaagatagttctcgaatttatttcagaaggtgagtctgacacctaaaggatttattatttcaaaaaga |
500 |
Q |
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| T |
1975 |
aacaagttctcaacacgaacaacaacatatctcaagatagttctcgaatttatttcagaaggtgagtctgatacctaaaggatttattatttcaaaaaga |
2074 |
T |
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| Q |
501 |
aaccgta-nnnnnnnnnataatgaactaaatgacaggtctaacacatcaaatattacaaataattttgtttaagtnnnnnnnccattttaatttgtagag |
599 |
Q |
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| T |
2075 |
aaccgtattttttttttataatgaactaaatgacaggtctaacacatcaaatattacaaataattttgtttaagtaaaaaaaccattttaatttgtagag |
2174 |
T |
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| Q |
600 |
agtgttacaataaagtatttgagatcac |
627 |
Q |
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| T |
2175 |
agtgttacaataaagtatttgagctcac |
2202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 42904869 - 42905360
Alignment:
| Q |
1 |
tcaaaactattaatcttttctttaatactacctcatccagaaaaaacatatacaaaatgcccatattcgcatatatgttcagcaagacaatgcagtttga |
100 |
Q |
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||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42904869 |
tcaaagctattaatcatttctttgatactacctcatccagaaaaaacatatacaaaatgcccatatttgcatatatgttcagcaagacaatgcagtttga |
42904968 |
T |
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| Q |
101 |
aagttagaaaaagatgacaattaatccgtccatggtgtgtatagagttaatggagcttgatactgc-------caccaaaggacacggggaaccagagag |
193 |
Q |
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| T |
42904969 |
aagttaaaaaaagatgacaattaatccgtctacggtatgtataacgttaatggagcttgatactgctttgagccaccaaagggcacggggaaccagagag |
42905068 |
T |
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| Q |
194 |
tcatctggcgagctaaaataccgcccaaatttaagaacttt-acgtggaggaattgattgccttccggatcatggttacaatctaatggtgttaattgtg |
292 |
Q |
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| T |
42905069 |
tcatctggcgagctaaaataccgcccaaatttaagaacttttatgtggaggaattgattgccttctggatcatg-ttacaatctaatggtgttaattgtg |
42905167 |
T |
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| Q |
293 |
atacaaacaatgctttatgcgactgacaagagcatatttttcataacatatttatgtgtggcaaaagcaagagaggatgacacctcgtaggactttggaa |
392 |
Q |
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| T |
42905168 |
atacaaacaatgctttatgcgacggacaagaggatatttttcatatcatatttatgtgtgacaaaagcaagagaggatgacacctcataggactttggaa |
42905267 |
T |
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| Q |
393 |
tgctattgaacaagttctcaacacgaacaacaacatatctcaagatagttctcgaatttatttcagaaggtgagtctgacacctaaaggatttatt |
488 |
Q |
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| T |
42905268 |
tgctattaaacaagttctaaatacg---aacaacatatctcaagatagttctcgaatttatttcagaaggtgagtctgacacctagagaatttatt |
42905360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 518 - 613
Target Start/End: Original strand, 42905378 - 42905471
Alignment:
| Q |
518 |
taatgaactaaatgacaggtctaacacatcaaatattacaaataattttgtttaagtnnnnnnnccattttaatttgtagagagtgttacaataaa |
613 |
Q |
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||||| ||||||||||| ||| |||||| ||||||||| ||||||||||||| |||| ||||||||||||||||| |||||| ||||||| |
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| T |
42905378 |
taatggactaaatgacatgtc-aacacaacaaatattataaataattttgttaaagt-aaaaacccattttaatttgtagatagtgtttcaataaa |
42905471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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