View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11807_low_4 (Length: 535)
Name: NF11807_low_4
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11807_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 30001383 - 30001024
Alignment:
| Q |
17 |
aaggttgttcaacttattagcacaagaaaatcttgtttagaaggttgagtccattgcaatttacaaacattgcttattattagaaaagtagttggtaaaa |
116 |
Q |
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| T |
30001383 |
aaggttgttcaacttattagcacaagaaaatcttgtttagaaggttgagtccattacaatttacaaacattgcttattattagaaaagttggtggtaaaa |
30001284 |
T |
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| Q |
117 |
gaaacctaaggaaaaaatttacctaagatttgaagcttagttaagaagacaacacaagacaaatttgaaccttttttatgtgttcatattgatattaata |
216 |
Q |
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| T |
30001283 |
gaaacctaaggaaaaaatttacctaagatttgaagcttagttaagaagacaacacaagacaaatgtgaaccttttttatgtgttcatattgatattaata |
30001184 |
T |
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| Q |
217 |
gcatagacttgtacgtttattgtggttaattgtctcctgacttttgctatccaattttaaatatggtgacaactacattattcatcaataaaatacgagt |
316 |
Q |
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| T |
30001183 |
gcatagacttgtacgtttattgtggttaattgtctcctgacttttgctatccaattttaaatatggtgacaactacattatccatcaatgaaatacgagt |
30001084 |
T |
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| Q |
317 |
agaggttatccatcgaagttgtcaccaatcaaaagtattcattcatc-ttcattaaaaat |
375 |
Q |
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| T |
30001083 |
agaggttatccatcgaagttgtccccaatcaaaagtattcattcatctttcattaaaaat |
30001024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 370 - 529
Target Start/End: Complemental strand, 29999628 - 29999468
Alignment:
| Q |
370 |
aaaaatgatacattcaattaagttggagtcactaaagact-catacaaatctggcacaaaacatgattaagagtaaacaaaattccctttcaaacttgaa |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
29999628 |
aaaaatgatacattcaattaagttggagtcactaaagacttcatacaaatctggcacaaaacatgattaagagtaaaaaaaattccctttcaaacacgaa |
29999529 |
T |
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| Q |
469 |
gatgatggtagcaagcaacttgaaatgatggcagcaagcatttgttatccttctccaacgt |
529 |
Q |
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| T |
29999528 |
gatgatggtagcaagcaacttgaaatgatggcagcaagcatttgttatccttctccaacgt |
29999468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 22875684 - 22875717
Alignment:
| Q |
17 |
aaggttgttcaacttattagcacaagaaaatctt |
50 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
22875684 |
aaggttgttcaacttattagcacaagaaaatctt |
22875717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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