View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11807_low_5 (Length: 488)
Name: NF11807_low_5
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11807_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Complemental strand, 7085722 - 7085271
Alignment:
| Q |
19 |
gtgtgttgatccaagtttgatgagcgaatatcccgacgatgaggttttacctgttttgaagctggctatggtgtgtacatctcaaattccatctagtagg |
118 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7085722 |
gtgtgttgatccaagtttgatgaacgaatatcccgaggatgaggttttacctgttttgaagctggctatggtgtgtacatctcaaattccatctagtagg |
7085623 |
T |
|
| Q |
119 |
cctactatggcagaagttgtgcaaatattgcaggtcattaaaactcctgttcctcaaaggatggaagtattttgatgagattaatacgcttatatgttta |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7085622 |
cctactatggcagaagttgtgcaaatattgcaggtcattaaaactcctgttcctcaaaggatggaagtattttgatgacattaatacgcttatatgttta |
7085523 |
T |
|
| Q |
219 |
gctattttcagtggttataagcttgggtcgcaattacactttgaaccattggactgtagaaaaacacagtaaaatttcagccacaattgtagttatgttg |
318 |
Q |
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|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7085522 |
gctattttcagtggttataaactgcggtcgcaattacactttgaaccattggactgtagaaaaacacagtaaaatttcagccacaattgtagttttgttg |
7085423 |
T |
|
| Q |
319 |
tcattgcagatatctcaaaaactgttacttgtggcttcgagtacataaagtcttctaaattatcaagattattgcatttttctaatttgtttccttcata |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7085422 |
tcattgcagatatctcaaaaactgttacttgtggcttcgagtacataaagtcttctaaattatcaagattattgcatttttctaatttgtttccttcata |
7085323 |
T |
|
| Q |
419 |
ctgtgtatcctttttaactctataatttagtttacgtggattctagttcata |
470 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7085322 |
ctgtgtatcctttttaactctataatttagtttatgtggattctagttcata |
7085271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 7001067 - 7001513
Alignment:
| Q |
19 |
gtgtgttgatccaagtttgatgagcgaatatcccgacgatgaggttttacctgttttgaagctggctatggtgtgtacatctcaaattccatctagtagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7001067 |
gtgtgttgatccaagtttgatgagcgaatatcccgaggatgaggttttacctgttttgaagctggctatggtctgtacatctcaaattccatctagtagg |
7001166 |
T |
|
| Q |
119 |
cctactatggcagaagttgtgcaaatattgcaggtcattaaaactcctgttcctcaaaggatggaagtattttgatgagattaatacgcttatatgttta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||| |
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| T |
7001167 |
cctactatggcagaagttgtgcaaatattgcaggtcattaaaacttctgttcctcaaaggatggaagtattttgatgacactaatacgcatatatgttta |
7001266 |
T |
|
| Q |
219 |
gctattttcagtggttataagcttgggtcgcaattacactttgaaccattggactgtagaaaaacacagtaaaatttcagccacaattgtagttatgttg |
318 |
Q |
| |
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|||||||||||||||| ||| || |||| ||||||||| ||||||| ||| ||| || |||||||||| | |||| |||||||||||||| ||||| |
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| T |
7001267 |
gctattttcagtggttttaaactgcggtcacaattacacattgaacctttgtacttctgagaaacacagtaga--ttcaaccacaattgtagttttgttg |
7001364 |
T |
|
| Q |
319 |
tcattgcagatatctcaaaaactgttacttgtggcttcgagtacataaagtcttctaaattatcaagattattgcatttttctaatttgtttccttcata |
418 |
Q |
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|
||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7001365 |
tcattgcagttatcttaaaaactgttacttgtggcttcgagtacataaagtattctgtattatcaagattattgcatttttctattttgtttccttcata |
7001464 |
T |
|
| Q |
419 |
ctgtgtatcctttttaactctataatttagtttacgtggattctagttcat |
469 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| |||||||||||||||| |
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|
| T |
7001465 |
ttgtgtatcctttttaa--ctataattcagtttatgtggattctagttcat |
7001513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 7046938 - 7047384
Alignment:
| Q |
19 |
gtgtgttgatccaagtttgatgagcgaatatcccgacgatgaggttttacctgttttgaagctggctatggtgtgtacatctcaaattccatctagtagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
7046938 |
gtgtgttgatccaagtttgatgagcgaatatcccgaggatgaggttttacctgttttgaagctggctatggtctgtacatctcaaattccatctagtagg |
7047037 |
T |
|
| Q |
119 |
cctactatggcagaagttgtgcaaatattgcaggtcattaaaactcctgttcctcaaaggatggaagtattttgatgagattaatacgcttatatgttta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||| |
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| T |
7047038 |
cctactatggcagaagttgtgcaaatattgcaggtcattaaaacttctgttcctcaaaggatggaagtattttgatgacactaatacgcatatatgttta |
7047137 |
T |
|
| Q |
219 |
gctattttcagtggttataagcttgggtcgcaattacactttgaaccattggactgtagaaaaacacagtaaaatttcagccacaattgtagttatgttg |
318 |
Q |
| |
|
|||||||||||||||| ||| || |||| ||||||||| ||||||| ||| ||| || |||||||||| | |||| |||||||||||||| ||||| |
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| T |
7047138 |
gctattttcagtggttttaaactgcggtcacaattacacattgaacctttgtacttctgagaaacacagtaga--ttcaaccacaattgtagttttgttg |
7047235 |
T |
|
| Q |
319 |
tcattgcagatatctcaaaaactgttacttgtggcttcgagtacataaagtcttctaaattatcaagattattgcatttttctaatttgtttccttcata |
418 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7047236 |
tcattgcagttatcttaaaaactgttacttgtggcttcgagtacataaagtattctgtattatcaagattattgcatttttctattttgtttccttcata |
7047335 |
T |
|
| Q |
419 |
ctgtgtatcctttttaactctataatttagtttacgtggattctagttcat |
469 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| |||||||||||||||| |
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|
| T |
7047336 |
ttgtgtatcctttttaa--ctataattcagtttatgtggattctagttcat |
7047384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 6995413 - 6995172
Alignment:
| Q |
19 |
gtgtgttgatccaagtttgatgagcgaata-tcccgacgatgaggttttacctgttttgaagctggctat---ggtgtgtacatctcaaattccatctag |
114 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||| || ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
6995413 |
gtgtgttgatccaagtttcatgaatgaataatcctgaggatgaggttttgcctgttttgaagcttgctattatggtgtgtacatctcaaattccatctag |
6995314 |
T |
|
| Q |
115 |
taggcctactatggcagaagttgtgcaaatattgcaggtcattaaaactcctgttcctcaaaggatggaagtattttgatgagattaatacgcttatatg |
214 |
Q |
| |
|
| | ||||||||||| |||||||| ||||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||||||||||| | |||||| |
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| T |
6995313 |
tggtcctactatggccgaagttgttcaaatattgcaggtcgctaaaattcatgttcctcaaa-gatagaagtattttgatgagattaatatgactatatg |
6995215 |
T |
|
| Q |
215 |
tttagctattttcagtggttataagcttgggtcgcaattacac |
257 |
Q |
| |
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|||||||| ||||||||||| ||| | |||||||||||||| |
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| T |
6995214 |
tttagctactttcagtggttttaaattgcggtcgcaattacac |
6995172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 469
Target Start/End: Complemental strand, 6995052 - 6994925
Alignment:
| Q |
351 |
ggcttcgagtacataaagtcttctaaattatcaagattattgcatttt----tctaatttgtttccttcatactgtgtatcctttttaactct-----at |
441 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||||||||| ||||| |||| |||||||||||| | |||||||||||||||||||| || |
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| T |
6995052 |
ggcttcaagtacataaagtcttctttagcatcaagattattgtattttcttttctattttgtttccttcttgttgtgtatcctttttaactctcctgcat |
6994953 |
T |
|
| Q |
442 |
aatttagtttacgtggattctagttcat |
469 |
Q |
| |
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||||||||||| |||||||||| ||||| |
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|
| T |
6994952 |
aatttagtttatgtggattctaattcat |
6994925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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