View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11807_low_6 (Length: 453)
Name: NF11807_low_6
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11807_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 45067683 - 45068012
Alignment:
| Q |
1 |
tgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttagcaatttagtccttgcaattgaa |
100 |
Q |
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| T |
45067683 |
tgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggcaaaaatgggaaaaacaagaagtggttagcaatttagtccttgcaactgaa |
45067782 |
T |
|
| Q |
101 |
ccttttattcaatatcaatgacataaactccattaagttgaaaaataataattagaatttggacnnnnnnntctaaacgaatttctaaatgattgaatgt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
45067783 |
ccttttattcaatatgaatgacataaactccattaagttgaaaaataataattagaatttggacaaaaaagtctaaactaatttctaaatgattgaatgt |
45067882 |
T |
|
| Q |
201 |
ctaatggaccatgaatacattaccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaag |
300 |
Q |
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| T |
45067883 |
ctaatggaccatgaatacattaccagggtctatgccatctgtgtttggaacgtccactggtgcaagaatagtaagtctatttataattatgttactgaag |
45067982 |
T |
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| Q |
301 |
atataaagtttaatcagaagaatgaaataa |
330 |
Q |
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| T |
45067983 |
atataaagtttagtcagatgaataaaataa |
45068012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 217 - 435
Target Start/End: Original strand, 45082921 - 45083139
Alignment:
| Q |
217 |
acattaccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagtttaatca |
316 |
Q |
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| T |
45082921 |
acattacctgggtctatgccatctgtgtttggaacgtccactggtgcaagaattgtaagtccgtttataattatgttactgaagatataaagtttaatca |
45083020 |
T |
|
| Q |
317 |
gaagaatgaaataacacacacatatagaaaataatgctttaaataaagttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggac |
416 |
Q |
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| T |
45083021 |
gaagaatgaaataacacacacatatagaaaataatgctttaaataaagttgagaaatttaaaaattgtgactcgtcaaacctgctgtaaactggatgtac |
45083120 |
T |
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| Q |
417 |
aaaccaaaaaggggaattg |
435 |
Q |
| |
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||||||| ||||||||||| |
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| T |
45083121 |
aaaccaagaaggggaattg |
45083139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 435
Target Start/End: Original strand, 45075451 - 45075709
Alignment:
| Q |
172 |
tctaaacgaatttctaaatgattgaatgtctaatggaccatgaatacatt-accagggtctatgccatctgtgtttggaacgtccactggtgccagaatt |
270 |
Q |
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||||||| |||||||||||||||| || || || ||||| |||||||| ||| |||||||||||||| ||||| |||| ||| |||||||| |||||| |
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| T |
45075451 |
tctaaactaatttctaaatgattgtatatcaaactgaccaaaaatacatttacctgggtctatgccatccgtgttaggaatgtcgactggtgcaagaatt |
45075550 |
T |
|
| Q |
271 |
gtaagtccgtttataattatgttac-------tgaagatataaagtttaatcagaagaatgaaataacacacacatatagaaaataatgctttaaataaa |
363 |
Q |
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| T |
45075551 |
gtaagtccatttataattatgttactgaagaatgaagatataaagtttagtcagatgaacgaaataatatatac--ttagaa-----------aaataag |
45075637 |
T |
|
| Q |
364 |
gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaaaaaggggaattg |
435 |
Q |
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| T |
45075638 |
gttgaaaaatttgaagatggtgactaatcaaacctgctgtaaactggatggacaaaccaagaaggggaattg |
45075709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 364 - 423
Target Start/End: Original strand, 45068021 - 45068080
Alignment:
| Q |
364 |
gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaa |
423 |
Q |
| |
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| T |
45068021 |
gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaa |
45068080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 45078620 - 45078721
Alignment:
| Q |
221 |
taccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcagaag |
320 |
Q |
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|||| |||| ||| ||||||||||||||| ||| |||||||| ||||| |||||||| |||||||||||||||||| ||| || ||| || |||||||| |
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| T |
45078620 |
tacctgggtttattccatctgtgtttggagagtctactggtgcaagaatggtaagtccatttataattatgttactgcagaaatgaagcttgatcagaag |
45078719 |
T |
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| Q |
321 |
aa |
322 |
Q |
| |
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|| |
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| T |
45078720 |
aa |
45078721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 45078476 - 45078536
Alignment:
| Q |
4 |
agttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaa |
64 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
45078476 |
agttgtcttcaattctaacgtttgtacatgagtctgttaagaaggggaaaaatgggaaaaa |
45078536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 45075245 - 45075384
Alignment:
| Q |
3 |
tagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttagcaatttagtccttgcaattgaacc |
102 |
Q |
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||||||||||||||| ||||||||||| || |||| |||| | |||||| ||||||||||||| |||| | |||||| ||||||||||||| || |
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| T |
45075245 |
tagttgtcttcaattctgacgtttgtacatgaatctggtaagta---aaaaaaatggaaaaacaagaagtggtcggtaatttactccttgcaattgagcc |
45075341 |
T |
|
| Q |
103 |
ttttattcaatatcaatgacataaactccattaagttgaaaaa |
145 |
Q |
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| T |
45075342 |
tcttgttcagtatgaaggtcataagttccatttagttggaaaa |
45075384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 45078769 - 45078801
Alignment:
| Q |
390 |
atcaaacctgctgtaaattggatggacaaacca |
422 |
Q |
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| T |
45078769 |
atcaaacctgctgtaaattggatgaacaaacca |
45078801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 219 - 329
Target Start/End: Original strand, 34505293 - 34505403
Alignment:
| Q |
219 |
attaccagggtctatgccatctgtgtttggaacgtccactggtgccagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcaga |
318 |
Q |
| |
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|||||| |||||||| ||||||||||||||| ||| |||||||| ||||| ||||| || |||||||||||||||||||||| |||||| || |||| | |
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| T |
34505293 |
attacctgggtctattccatctgtgtttggagagtctactggtgcaagaatggtaagaccctttataattatgttactgaagaaataaagcttgatcaaa |
34505392 |
T |
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| Q |
319 |
agaatgaaata |
329 |
Q |
| |
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||||||||||| |
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| T |
34505393 |
agaatgaaata |
34505403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 435
Target Start/End: Original strand, 34505450 - 34505511
Alignment:
| Q |
374 |
ttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaaaaaggggaattg |
435 |
Q |
| |
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|||||||||| | | |||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
34505450 |
ttgaaaatggtgcattatcaaacctgctgtaagttggatggacaaaccaagaaggggaattg |
34505511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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