View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11807_low_8 (Length: 395)
Name: NF11807_low_8
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11807_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 377
Target Start/End: Original strand, 36471767 - 36472122
Alignment:
| Q |
14 |
ctgtgagggctaggatgaaaatgataattgatgctcttcctaataaggcaataagctttctcaccaaatgttgcccaacaagtgcagcaacagtggctac |
113 |
Q |
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| T |
36471767 |
ctgtgagggctaggatgaaaatgataattgatgctcttcctaataaggcaataagctttctcaccaaatgttgcccaacaagtgcagcaacagtggctac |
36471866 |
T |
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| Q |
114 |
aactacaaagtaaagagctgcaagaataatcaaacgttgaatattaaatgttttagagnnnnnnnnnnttcaaatattaaaatt-atccatgcacttacc |
212 |
Q |
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| T |
36471867 |
aactacaaagtaaagagctgcaagaataatcaaacgttgaatattaaatgttttagagaaaa---------aaaaattcaaatttatccatgcacttacc |
36471957 |
T |
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| Q |
213 |
atatggaattggaaaacgtttcagaaggtaatattctaccacagacatagatgcagaaaatgtcattgcaaaagtggatgtagcacttgccaccttaata |
312 |
Q |
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| T |
36471958 |
atatggaattggaaaacgtttcagaaggtaatattccaccacagacatagatgcagaaaatgtcattgcaaaagtggatgtagcacttgccaccttaata |
36472057 |
T |
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| Q |
313 |
gaaaattccccaatcaaaacacaaacatatatacgaacatagtaacataaatctctttagtagtt |
377 |
Q |
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| T |
36472058 |
gaaaattccccaatcaaaacacaaacatatatacgaacatagtaacataaatctctttattagtt |
36472122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 36462540 - 36462688
Alignment:
| Q |
14 |
ctgtgagggctaggatgaaaatgataattgatgctcttcctaataaggcaataagctttctcaccaaatgttgcccaacaagtgcagcaacagtggctac |
113 |
Q |
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| T |
36462540 |
ctgtgagggctaagatgaaaatgataattgatgctctccctaataagacaataagctttctcaccaaatgttgcccaacaagtgcagcaacagtggctac |
36462639 |
T |
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| Q |
114 |
aactacaaagtaaagagctgcaagaataatcaaacgttgaatattaaat |
162 |
Q |
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| T |
36462640 |
aactacaaagtaaagagctgcaagaataatcaaacgttgaatattaaat |
36462688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 182 - 319
Target Start/End: Original strand, 36462797 - 36462934
Alignment:
| Q |
182 |
ttcaaatattaaaattatccatgcacttaccatatggaattggaaaacgtttcagaaggtaatattctaccacagacatagatgcagaaaatgtcattgc |
281 |
Q |
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| T |
36462797 |
ttcaaatattaaatttatccatacacttaccatatggaatgggaaaacgtttcagaaggtaatattccaccacagacatagatgcagaaaatgtcattgc |
36462896 |
T |
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| Q |
282 |
aaaagtggatgtagcacttgccaccttaatagaaaatt |
319 |
Q |
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| T |
36462897 |
aaaagtggatgtagcacttgataccttcaaagaaaatt |
36462934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 34070801 - 34070747
Alignment:
| Q |
22 |
gctaggatgaaaatgataattgatgctcttcctaataaggcaataagctttctca |
76 |
Q |
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| T |
34070801 |
gctaggatgaaaatgataatcgaagctttacctgataaggcaataagttttctca |
34070747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 50750102 - 50750005
Alignment:
| Q |
210 |
accatatggaattggaaaacgtttcagaaggtaatattctaccacagacatagatgcagaaaatgtcattgcaaaagtggatgtagcacttgccacct |
307 |
Q |
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| T |
50750102 |
accataaggaactggaaatcgtttcagcaagtagtattccacaacagacatagacgaggagaatgtcattgcaaaagtggctgtggcgcttgacacct |
50750005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 50812709 - 50812788
Alignment:
| Q |
210 |
accatatggaattggaaaacgtttcagaaggtaatattctaccacagacatagatgcagaaaatgtcattgcaaaagtgg |
289 |
Q |
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|||||| ||||| ||||| |||||||| | || |||||||| ||||||||||| | || ||||||||||||||||||| |
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| T |
50812709 |
accataaggaatcggaaatcgtttcagcaaatagtattctacaacagacatagacgaggagaatgtcattgcaaaagtgg |
50812788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 50863155 - 50863076
Alignment:
| Q |
210 |
accatatggaattggaaaacgtttcagaaggtaatattctaccacagacatagatgcagaaaatgtcattgcaaaagtgg |
289 |
Q |
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| T |
50863155 |
accataaggaatcggaaatcgtttcagcaaatagtattctacaacagacatagacgaggagaatgtcattgcaaaagtgg |
50863076 |
T |
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