View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11807_low_9 (Length: 390)

Name: NF11807_low_9
Description: NF11807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11807_low_9
NF11807_low_9
[»] chr8 (1 HSPs)
chr8 (7-375)||(29156620-29156988)
[»] chr2 (4 HSPs)
chr2 (7-375)||(2580890-2581258)
chr2 (1-375)||(2595579-2595947)
chr2 (4-375)||(2576457-2576822)
chr2 (26-375)||(2588534-2588872)
[»] chr6 (1 HSPs)
chr6 (1-374)||(30398696-30399063)
[»] chr7 (7 HSPs)
chr7 (7-364)||(46768949-46769303)
chr7 (285-375)||(36260106-36260196)
chr7 (8-225)||(36254946-36255162)
chr7 (280-364)||(36262901-36262985)
chr7 (280-360)||(36255214-36255294)
chr7 (187-225)||(20495542-20495580)
chr7 (8-61)||(36262632-36262685)
[»] chr3 (2 HSPs)
chr3 (313-374)||(21621143-21621204)
chr3 (313-374)||(21642813-21642874)
[»] chr4 (2 HSPs)
chr4 (280-375)||(19358985-19359080)
chr4 (23-104)||(19358725-19358806)


Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 29156620 - 29156988
Alignment:
7 caagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaagt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29156620 caagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaagt 29156719  T
107 gtggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatttgaatg 206  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29156720 gtggcagacaatgtttggaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatttgaatg 29156819  T
207 gtcgtcttaattggttggccattcaagatcgtcccgttagtgttgatgttgatgtttgggaggatattgaggctaaggaatttgtcattgtttcacttga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29156820 gtcgtcttaattggttggccattcaagatcgtcccgttagtgttgatgttgatgtttgggaggatattgaggctaaggaatttgtcattgtttcacttga 29156919  T
307 tgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagcc 375  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
29156920 tgtggaaacagagtcatacacacagttgatgtctccctgtgcttttgatgaaatgtcatctattaagcc 29156988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 2580890 - 2581258
Alignment:
7 caagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaagt 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||| |    
2580890 caagtttgcttttgtttatgataattcatcggagacatataagcttgtaatgttaatgttggatgtagttgaaaataaaactcatgtgcgagttttaaat 2580989  T
107 gtggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatttgaatg 206  Q
    ||| | || |||||||| ||||||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
2580990 gtgactgataatgtttggaaaactatttcaaattttccggcggttcctcttcctaatatatatactggtcagggtgggagtgatggtgtgtatttaaatg 2581089  T
207 gtcgtcttaattggttggccattcaagatcgtcccgttagtgttgatgttgatgtttgggaggatattgaggctaaggaatttgtcattgtttcacttga 306  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| ||||||| ||||| ||||||| ||||||||  |||||||||||||    
2581090 gtcgtcttaattggttggccattcaggatcgtcctgttagtgatgatgttgatggttgggagaatattaaggctaatgaatttgttgttgtttcacttga 2581189  T
307 tgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagcc 375  Q
    | |||  ||| | |||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||    
2581190 tctggggacaaaatcatacacgcagttgatgcctccatgtggttttgatgaaatgtcatctgttaagcc 2581258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 2595579 - 2595947
Alignment:
1 acattgcaagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagtt 100  Q
    ||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||     
2595579 acattacaagtttacttttgtttatgataattcatcggagacgtataaggttgtattgttaatgttggatgtagttcaaaatagaactcatgtgcaagta 2595678  T
101 ttaagtgtggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatt 200  Q
    |||| |||||| || |||||||| |||||||||||| ||||||| ||||||||||||||||||  ||| || ||||||||||||  ||||||||||||||    
2595679 ttaaatgtggctgataatgtttggaaaactattccaaattttcctgcggttcctcttcctaatcaatacactggtcagggtgggtctgatggtgtgtatt 2595778  T
201 tgaatggtcgtcttaattggttggccattcaagatcgtcccgttagtgttgatgttgatgtttgggaggatattgaggctaaggaatttgtcattgtttc 300  Q
    |||||||||||||||||||||||||||||||  ||||||| |||||      |||||||| ||||||| ||||| |||||||||||||||||||||||||    
2595779 tgaatggtcgtcttaattggttggccattcagaatcgtcctgttag------tgttgatggttgggagaatattaaggctaaggaatttgtcattgtttc 2595872  T
301 acttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagcc 375  Q
    |||| || ||| ||| ||||| ||||| |||||||||||||||| || |||||||||||||||||||||||||||    
2595873 actttatatgggaacggagtcgtacacgcagttgatgcctccctctggttttgatgaaatgtcatctattaagcc 2595947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 4 - 375
Target Start/End: Original strand, 2576457 - 2576822
Alignment:
4 ttgcaagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagtttta 103  Q
    ||||||||| || ||| | |||||| |||| || ||||| |||||||||||| |||||  |||||||||| ||||||||| |||||| |||| ||||||     
2576457 ttgcaagttcgcgtttctttatgatgattcttcagagacttataaggttgtattgttaaagttggatgtagttgaaaataaaactcacgtgcgagttttt 2576556  T
104 agtgtggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatttga 203  Q
    |||||||| || |||| ||| |||||||||||| ||||||| || |||||||||||||||  |||||| | ||||||||||||| |||||||||||||||    
2576557 agtgtggctgataatgcttggaaaactattccaaattttcctgcagttcctcttcctaatcgatatactgatcagggtgggagtcatggtgtgtatttga 2576656  T
204 atggtcgtcttaattggttggccattcaagatcgtcccgttagtgttgatgttgatgtttgggaggatattgaggctaaggaatttgtcattgtttcact 303  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||    |||  ||| ||||||| ||||| || |||||||||||||||||||||||||    
2576657 atggtagtcttaattggttggccattcaggatcgtcctgttagtg----tgt--atggttgggagaatattaagtctaaggaatttgtcattgtttcact 2576750  T
304 tgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagcc 375  Q
    |||| ||| |||| ||||  ||||||||||||||||||||| || ||||||||||| ||||||| |||||||    
2576751 tgatatgggaacaaagtcgcacacacagttgatgcctccctctggttttgatgaaacgtcatctgttaagcc 2576822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 26 - 375
Target Start/End: Original strand, 2588534 - 2588872
Alignment:
26 gataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaagtgtggcagacaatgtttgaa 125  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| || || |||||||| |    
2588534 gataattcatcgaaaacatataaggttgtaatgttaatgttggatgtagttgaaaatagaactcatgtgcgagttttaagtgtcgctgataatgtttgga 2588633  T
126 aaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatttgaatggtcgtcttaattggttggc 225  Q
    |||| ||| || ||||||| ||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
2588634 aaacaatttcaaattttcctgcggttcctcttcctgatagatatactggtcagggtgggagtgatggtgtgtatttgaatggtaatcttaattggttggc 2588733  T
226 cattcaagatcgtcccgttagtgttgatgttgatgtttgggaggatattgaggctaaggaatttgtcattgtttcacttgatgtggaaacagagtcatac 325  Q
    |||         ||| ||||   ||  |||||| | | ||||| ||||| || |||| ||||||||  ||||||||||||||  ||  ||||| ||||||    
2588734 cat---------tcctgtta--attagtgttgacggtcgggagaatattaagcctaatgaatttgttgttgtttcacttgatcagggcacagaatcatac 2588822  T
326 acacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagcc 375  Q
    || ||||||||||||||||||| ||||||||||||||||| | |||||||    
2588823 acgcagttgatgcctccctgtggttttgatgaaatgtcatatgttaagcc 2588872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 30398696 - 30399063
Alignment:
1 acattgcaagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagtt 100  Q
    ||||| ||||||| ||||||| ||||| ||||||||| |||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||    
30398696 acattacaagttttcttttgtttatgacaattcatcgaagacgtataaggttgtaatgttaatgttggatgcagttgaaaatagaactcatgtgcgagtt 30398795  T
101 ttaagtgtggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatt 200  Q
    |||||||||||  | |||||||| |||||||||||| ||||||  |||||||||||||||| |  |||||| ||||| |||| | |||||||||||||||    
30398796 ttaagtgtggctaataatgtttggaaaactattccaaattttcatgcggttcctcttcctactcgatatactggtcaaggtgagtgtgatggtgtgtatt 30398895  T
201 tgaatggtcgtcttaattggttggccattcaagatcgtcccgttagtgttgatgttgatgtttgggaggatattgaggctaaggaatttgtcattgtttc 300  Q
    ||| ||||||||||||||||||||||||||| |||||||| |||||      |||| ||| ||||||| ||||| |||||||||||||||||||||||||    
30398896 tgattggtcgtcttaattggttggccattcaggatcgtcctgttag------tgtttatggttgggagaatattaaggctaaggaatttgtcattgtttc 30398989  T
301 acttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagc 374  Q
    ||||||| ||| ||||||||  ||||  ||  |||||||||||| || ||||||||||||||||||||||||||    
30398990 acttgatatgggaacagagttgtacatgcaaatgatgcctccctctggttttgatgaaatgtcatctattaagc 30399063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 7 - 364
Target Start/End: Original strand, 46768949 - 46769303
Alignment:
7 caagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaagt 106  Q
    ||||||||| ||||  | |||||||||||||||||| ||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||| |||    
46768949 caagtttgcctttggttttgataattcatcggagacttataaggttgtaatgttaacgttggatgtagttgaaaatagaactcatgtgcaagttttgagt 46769048  T
107 gtggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatttgaatg 206  Q
    ||||  || ||| |||| | |||||||| |  |||||| ||||||||||||||||||   ||||    ||||||||||||||||||||||||||||||||    
46769049 gtgggtgataatatttggagaactattcaaagttttcctgcggttcctcttcctaattgctataaaaatcagggtgggagtgatggtgtgtatttgaatg 46769148  T
207 gtcgtcttaattggttggccattcaagatcgtcccgttagtgttgatgttgatgtttg--ggaggatattgaggctaaggaatttgtcattgtttcactt 304  Q
    ||||||||||||||||||||||||| |||||||  ||||||||| |||     ||| |  |||| ||||| |||||||||||||||  ||||||||||||    
46769149 gtcgtcttaattggttggccattcaggatcgtcttgttagtgtttatg-----gttgggaggagaatattaaggctaaggaatttgcgattgtttcactt 46769243  T
305 gatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtca 364  Q
     ||  ||||||| | |||| ||| | ||||||||||||  ||| ||||||||||||||||    
46769244 tatacggaaacaaaatcattcacgcggttgatgcctcctcgtggttttgatgaaatgtca 46769303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 375
Target Start/End: Original strand, 36260106 - 36260196
Alignment:
285 aatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagcc 375  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||||||| || | |||||||||||||||| ||||| ||||    
36260106 aatttgtgattgtttcacttgatctggaaacagagacatacacaaagttgatgcctccttgcggttttgatgaaatgtcacctattgagcc 36260196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 36254946 - 36255162
Alignment:
8 aagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaagtg 107  Q
    |||||||| ||||  ||| |||||||||| ||||| ||||||||||| |||||| | |||||||   || ||||||||||| | ||||||  |||| |||    
36254946 aagtttgcgtttggttattataattcatcagagacttataaggttgtgatgttaattttggatgatgttaaaaatagaactgacgtgcaaactttatgtg 36255045  T
108 tggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatttgaatgg 207  Q
    ||    | |||||||| ||| |||||| | ||||||| || |||| |||||||  | |  ||||  |||  |||| || |||||||||||||||||||||    
36255046 tgtgtaataatgtttggaaacctattcaaaattttcctgctgttcttcttccttttgt-gatactagtcctggtgtgaatgatggtgtgtatttgaatgg 36255144  T
208 tcgtcttaattggttggc 225  Q
    | || |||||||||||||    
36255145 tagttttaattggttggc 36255162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 36262901 - 36262985
Alignment:
280 taaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtca 364  Q
    |||||| ||||| ||||||||| ||||| | | ||||||| |||||||||||   |||||||| |||| ||||||||||||||||    
36262901 taaggactttgtgattgtttcatttgatctaggaacagagacatacacacagccaatgcctccgtgtggttttgatgaaatgtca 36262985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 36255214 - 36255294
Alignment:
280 taaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaat 360  Q
    |||||| ||||| |||||| | |||||| ||| ||||||| ||||||| ||| ||||||||||  ||| ||||||||||||    
36255214 taaggactttgtgattgttgcgcttgatctgggaacagagacatacacgcagctgatgcctccgcgtggttttgatgaaat 36255294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 20495542 - 20495580
Alignment:
187 tgatggtgtgtatttgaatggtcgtcttaattggttggc 225  Q
    |||||||||||||||||||||| |||| |||||||||||    
20495542 tgatggtgtgtatttgaatggtagtctgaattggttggc 20495580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 36262632 - 36262685
Alignment:
8 aagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgtta 61  Q
    |||||||| ||||  |||||||||||||| ||||| ||||||||||| ||||||    
36262632 aagtttgcatttggttatgataattcatcagagacttataaggttgtgatgtta 36262685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 21621204 - 21621143
Alignment:
313 aacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagc 374  Q
    ||||||||  ||||| |||||||||||||||| || ||||||||||||||||||||||||||    
21621204 aacagagttgtacacgcagttgatgcctccctctggttttgatgaaatgtcatctattaagc 21621143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 21642874 - 21642813
Alignment:
313 aacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagc 374  Q
    ||||||||  ||||| |||||||||||||||| || ||| ||||||||||||||||||||||    
21642874 aacagagttgtacacgcagttgatgcctccctttggtttggatgaaatgtcatctattaagc 21642813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 19358985 - 19359080
Alignment:
280 taaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagcc 375  Q
    |||| ||||||| |||||||||||||||  || |||| || |||||||| ||||||||||||| |||| |||| |||| ||||||  |||||||||    
19358985 taagaaatttgtgattgtttcacttgattagggaacaaagacatacacaaagttgatgcctccttgtggtttttatgacatgtcacttattaagcc 19359080  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 19358725 - 19358806
Alignment:
23 tatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaa 104  Q
    |||||||| |||||| |||| ||||||||||| |||||| | ||||||| |  |||||| ||||||| || || ||||||||    
19358725 tatgataactcatcgcagacttataaggttgtgatgttacttttggatgaagctgaaaacagaactcgtgcgcgagttttaa 19358806  T

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