View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11808_high_5 (Length: 218)
Name: NF11808_high_5
Description: NF11808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11808_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 2751287 - 2751500
Alignment:
| Q |
1 |
cgcactattaactcatccaccaaagaagtcctgagagatgagaatgctaaggtgtctagctagcttcaaaagaaaaaggtacatttcctctaatcacaca |
100 |
Q |
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| T |
2751287 |
cgcactattaactcatccaccaaagaagtcctgagagatgagaatgctaaggtgtctagctagcttcaaaagaaaaaggtacatttcctctaatcacaca |
2751386 |
T |
|
| Q |
101 |
atgattctcttatacatctttttagatatcttttacaatattaacttgtgaaacttttcaagaataaagttggttctaatattgtatatatttttcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2751387 |
atgattctcttatacatctttttagatatcttttacaatattaacttgtgaaacttttcaagaataaagtaggttctaatattgtatatatttttcattt |
2751486 |
T |
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| Q |
201 |
gatctgctaccata |
214 |
Q |
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||| |||||||||| |
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| T |
2751487 |
gatgtgctaccata |
2751500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 2836411 - 2836337
Alignment:
| Q |
39 |
tgagaatgctaaggtgtctagctagcttcaaaagaaaaaggtacatttcctctaatcacacaatgattctcttat |
113 |
Q |
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||||||||||| |||||||||| |||||||||| || ||||||| | |||||| ||| | ||||| ||||||||| |
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| T |
2836411 |
tgagaatgctatggtgtctagcaagcttcaaaacaagaaggtacctctcctctgatcgcgcaatgcttctcttat |
2836337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 11115612 - 11115500
Alignment:
| Q |
1 |
cgcactattaactcatccaccaaagaagtcctgagaga-tgagaatgctaaggtgtctagctagcttcaaaagaaaaaggtacatttcctctaatcacac |
99 |
Q |
| |
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|||||||||||||||||| |||| || ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| | |
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| T |
11115612 |
cgcactattaactcatcctccaagga-gtcctgaacaactgagaatgctaaggtgtctagctagcttcaaaagaagaaggtacctttcctctgatcaaat |
11115514 |
T |
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| Q |
100 |
aatgattctcttat |
113 |
Q |
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|||||||||||||| |
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| T |
11115513 |
aatgattctcttat |
11115500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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