View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11808_low_1 (Length: 636)
Name: NF11808_low_1
Description: NF11808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11808_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 569; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 3 - 620
Target Start/End: Original strand, 48453511 - 48454128
Alignment:
| Q |
3 |
caaaggcgagaaaaagatgaaattcagctgcttaagatgtgttgagtggctgagttatatttagagaagttgggaccataatagaaaaatgtaagcttnn |
102 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48453511 |
caaaggcgagaaaaagatgaacttcagctgcttaagatgtgttgagtggctgagttatatttagagaagttgggaccagaatagaaaaatgtaagcttaa |
48453610 |
T |
|
| Q |
103 |
nnnnntatcattcaaaagagagagaaatgtgaacaattcactattccgacactttattactaacctttgaatagaagtccaattgcataagcataatctc |
202 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48453611 |
aaaaatatcattcaaaagagaaagaaatgtgaacaattcactattccaacactttattactaacctttgaatagaagtccaattgcataagcataatctc |
48453710 |
T |
|
| Q |
203 |
aagttcaggaagagtggcaaagagagcaaatgcattaagatttaaggaagtgaatgctgttcaacaatgggttattaatgttcaagttatcaaaatcata |
302 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48453711 |
aagttcaggaagagtggcaaagagagcaaatgcattaagatttaaggaagtgaatgctgttcaacaatgggttattaatgttcaagttatcaaaatcata |
48453810 |
T |
|
| Q |
303 |
tccatagtactccaatgaagtgagcttaaggaaaactatcgaactcagttttatatacatcgtgaagtcgcaggatatgacatagcatgatgacatacgg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| || |
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| T |
48453811 |
tccatagtactccaatgaagtgagcttaaggaaaactatcgaactcagttttatatacatcctgaagtcgcaggatatgaaatagcatgatgacataagg |
48453910 |
T |
|
| Q |
403 |
atgaactcaatatcttctgcattgatatcatgatttgaactcacaacaatctaagtgaagctcttcaagccgtagacaattagacaacaaacttttgatg |
502 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48453911 |
atgaactcaatatcttctgcattgatatcatgatttgaactcacaacaatctaagtgaagctcttcaagccgtagacaattagacaacaaacttttgatg |
48454010 |
T |
|
| Q |
503 |
aatatttcatccacttttgcaaattcaagtgaaagagatctcaaatttttgaatgggaataaagtcccagttggtgggatggcaaacaagagaatattct |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48454011 |
aatatttcatccacttttgcaaattcaagtgaaagagatctcaaatttttgaatgggaataaagtcccagttggtgggatggcaaacaagagaatattct |
48454110 |
T |
|
| Q |
603 |
aaacgcattgttgtgcat |
620 |
Q |
| |
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|||||||||||||||||| |
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| T |
48454111 |
aaacgcattgttgtgcat |
48454128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 435 - 591
Target Start/End: Complemental strand, 47927346 - 47927191
Alignment:
| Q |
435 |
atttgaactcacaacaatctaagtgaagctcttcaagccgtagacaattagacaacaaacttttgatgaatatttcatccacttttgcaaattcaagtga |
534 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||| || ||||||||| |||||||||| ||||| ||||||||||||||| | | |||||| |
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| T |
47927346 |
atttgaactcacaataaactaagcaaagctcttcaagcagtccacaattagataacaaactttctatgaacatttcatccacttttacttcattaagtga |
47927247 |
T |
|
| Q |
535 |
aagagatctcaaatttttgaatgggaataaagtcccagttggtgggatggcaaacaa |
591 |
Q |
| |
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|||| || ||||||| |||||| ||||||||||| || ||||| |||| |||||||| |
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|
| T |
47927246 |
aagatatgtcaaattcttgaat-ggaataaagtcacaattggttggattgcaaacaa |
47927191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 591
Target Start/End: Original strand, 48108100 - 48108230
Alignment:
| Q |
460 |
aagctcttcaagccgtagacaattagacaacaaacttttgatgaatatttcatccacttttgcaaattcaagtgaaagagatctcaaatttttgaatggg |
559 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||||| ||||| ||||||||| |||||| ||||| || |||||| |||||||||| ||| || |
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| T |
48108100 |
aagctcttcaagttgtggacaattagataacaaactttcaatgaaagtttcatccagctttgcactatcaagcgatagagatttcaaattttttaat-gg |
48108198 |
T |
|
| Q |
560 |
aataaagtcccagttggtgggatggcaaacaa |
591 |
Q |
| |
|
| | ||||| || |||||||||||| |||||| |
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|
| T |
48108199 |
agtgaagtcgcaattggtgggatggaaaacaa |
48108230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 558
Target Start/End: Original strand, 47051879 - 47051977
Alignment:
| Q |
460 |
aagctcttcaagccgtagacaattagacaacaaacttttgatgaatatttcatccacttttgcaaattcaagtgaaagagatctcaaatttttgaatgg |
558 |
Q |
| |
|
|||||||| ||||||| | ||||||||||| | ||||| | ||| ||||||| | ||||||| | ||||||| |||||||||| |||||||||||| |
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| T |
47051879 |
aagctcttgaagccgtgggcaattagacaagagactttcaaggaaagtttcatctagttttgcacttacaagtgatagagatctcagatttttgaatgg |
47051977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 591
Target Start/End: Complemental strand, 39411643 - 39411485
Alignment:
| Q |
432 |
atgatttgaactcacaacaatctaagtgaagctcttcaagccgtagacaattagacaacaaacttttgatgaatatttcatccacttttgcaaattcaag |
531 |
Q |
| |
|
|||||||||| | |||| || |||||| ||||||||||| ||||||||| || |||||||||| ||||| ||||||||||||| | | | || |
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|
| T |
39411643 |
atgatttgaaattacaagaagctaagtagagctcttcaagtagtagacaatcagggaacaaactttctatgaacatttcatccacttctacttttcttag |
39411544 |
T |
|
| Q |
532 |
tgaaagagatctcaaatttttgaatgggaataaagtcccagttggtgggatggcaaacaa |
591 |
Q |
| |
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|||||| ||| ||||||| |||||| ||||||||||| || ||||| |||| | |||||| |
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|
| T |
39411543 |
tgaaagtgatatcaaattcttgaat-ggaataaagtcacaattggttggattgtaaacaa |
39411485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 517
Target Start/End: Complemental strand, 39403430 - 39403345
Alignment:
| Q |
432 |
atgatttgaactcacaacaatctaagtgaagctcttcaagccgtagacaattagacaacaaacttttgatgaatatttcatccact |
517 |
Q |
| |
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||||||| |||| |||| ||||||| | ||||||||||| ||||||||||||| | |||||||| ||||| ||||||| |||| |
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| T |
39403430 |
atgatttaaacttacaagaatctaaatagagctcttcaagtagtagacaattagataccaaactttctatgaacatttcattcact |
39403345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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