View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11808_low_4 (Length: 249)
Name: NF11808_low_4
Description: NF11808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11808_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 2751797 - 2752033
Alignment:
| Q |
8 |
tagtatgttattataatttggctgtagaacctttcattcaaaaccttgtaatcacaacctatacacggactccattcagacgtcattttgaagtttctgt |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2751797 |
tagtatgttattataatatggctgtagaacctttcattcaaaaccttgtaatcacaacctatacacggactccattcagacgtcattttgaagtttctgt |
2751896 |
T |
|
| Q |
108 |
ccatgtaataatcaaaatatcctcatttgaatgaatatttttattctgctaaccaagattaattctgctttcattatatttaagttgattcaaagttaat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2751897 |
ccatgtaataatcaaaatatcctcatttgaatgaatatttttattttgctaaccaagattaattctgctttcat--tatttaagttgattcaaagttaat |
2751994 |
T |
|
| Q |
208 |
caagaggacatgtatgtgacttagccaacctgcttcatc |
246 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2751995 |
caagaggacatgtatgtgacttagccaactggcttcatc |
2752033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 2800434 - 2800491
Alignment:
| Q |
38 |
ctttcattcaaaaccttgtaatcacaacctatacacggactccattcagacgtcattt |
95 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||| |
|
|
| T |
2800434 |
ctttgattcaaaaccttgtaatcaagacctatatttggactccattcagacatcattt |
2800491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University