View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_1 (Length: 1025)
Name: NF11809_high_1
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_1 |
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| [»] scaffold0223 (1 HSPs) |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 960; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 960; E-Value: 0
Query Start/End: Original strand, 14 - 1011
Target Start/End: Complemental strand, 45504786 - 45503791
Alignment:
| Q |
14 |
cagagacatacatgcaaaactctcatcttcgaaactagaaccatagatactaactccaccggttccctgcagccaatggaaacacattttgagtgagaag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45504786 |
cagagacatacatgcaaaactctcatcttcgaaactagaaccatagatactaactccaccggttccctgcagccaatggaaacacattttgagtgagaag |
45504687 |
T |
|
| Q |
114 |
aaacataattaccttcattgaaacaaatacatggcaagtggaagtaaatgttcacattaacatataaacaaatataacaaaggctattcgcatatacaag |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45504686 |
aaacataattaccttcattgaaacaaatacatggcaagtggaagtaaatgttcacattaacatataaacaaatataacaaaggctattcgcatatacaag |
45504587 |
T |
|
| Q |
214 |
caaacaaacacatgcaacaaatctcacatttccctcggtgaagtcccctccctgaatcatgaattctttgattatacgatggaaggagcatcctttgtaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45504586 |
caaacaaacacatgcaacaaatctcacatttccctcggtgaagtcccctccctgaatcatgaattctttgattatacgatggaaggagcatcctttgtaa |
45504487 |
T |
|
| Q |
314 |
ccatatcctttatctcctgcaaaaagattattgaagccaaactttaaaatgctatgttacacaatttattcnnnnnnngtaaaccaagtacaaggacaaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45504486 |
ccatatcctttatctcctgcaaaaagattattgaagccaaactttaaaatgctatgttacacaatttattcaaaaaa-gtaaaccaagtacaaggacaaa |
45504388 |
T |
|
| Q |
414 |
ggtgcagaaaaatatggttgcttgcctgtgcacaaagcacggaaattttcaactgttttaggagcaacctctccaaacaagcccaaaacaattctgccca |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45504387 |
ggtgcagaaaaatatggttgcttgcctgtgcacaaagcacggaaattttcaactgttttaggagcaacctctccaaacaagcccaaaacaattctgccca |
45504288 |
T |
|
| Q |
514 |
aagattcacccccagcttctacgtcaaagaaacatttggtagtaactttggcttgcagctcttgaaccttataacagtaataaaaccatgtaagataata |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45504287 |
aagattcacccccagcttctacgtcaaagaaacatttggtagtaactttggcttgcagctcttgaaccttataacagtaataaaaccatgtaagataata |
45504188 |
T |
|
| Q |
614 |
aacgtccaacatcttaatcacaacacagtcaactattgaacaatgccagcgatttttgtgattaacaaatagtcaataggattataaacgcgtaaacaat |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45504187 |
aacgtccaacatcttaatcacaacacagtcaactattgaacaatgccagcgatttttgtgattaacaaatagtcaatacgattataaacgcgtaaacaat |
45504088 |
T |
|
| Q |
714 |
acaaacatttaatgaaatcaaacaacaaacaagcagtctaaatataaaaaatcatttgagataggtttagtttaagaaaacattttcaactcgttttctg |
813 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45504087 |
acaaacatttaatgaaatcaaacaacaaacaagcagtctaaatataaaaaatcatttgagataggtttagtttaagaaaacattttcaactcgttttctg |
45503988 |
T |
|
| Q |
814 |
ttttccttataaattacagaagtaacattttataagactataagtattctcgagtaaaaagtcatgttgataccaaatgtgtgaggcactaaagtagtca |
913 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45503987 |
ttttccttataaattacagaagtaacattttataagactataagtattctcgagtaaaaagtcatgttgataccaaatgtgtgaggcactaaagtagtca |
45503888 |
T |
|
| Q |
914 |
tcaaatttatcaaattacaaaaacatccctaaatgtgtcctttgttagtaattttatggactaaattaactaactgaaaaacattcaaagatctaact |
1011 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45503887 |
tcaaatttatcaaattacaaaaacatccctaaatgtgtcctttgttagtaatttta-ggactaaattaactaactgaaaaacattcaaagatctaact |
45503791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 236 - 334
Target Start/End: Complemental strand, 38220724 - 38220626
Alignment:
| Q |
236 |
ctcacatttccctcggtgaagtcccctccctgaatcatgaattctttgattatacgatggaaggagcatcctttgtaaccatatcctttatctcctgca |
334 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||| | | ||||||||||||||||||| ||||||||| |
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| T |
38220724 |
ctcacatttccttctgtgaagtcccctccctgaatcatgaaatctttgattatgcgatggaaggtggaatctttgtaaccatatcctttctctcctgca |
38220626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 419 - 571
Target Start/End: Complemental strand, 38220532 - 38220380
Alignment:
| Q |
419 |
agaaaaatatggttgcttgcctgtgcacaaagcacggaaattttcaactgttttaggagcaacctctccaaacaagcccaaaacaattctgcccaaagat |
518 |
Q |
| |
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|||||||| || |||||| |||||||||||||| |||||||||||||||||||| ||| |||| |||||||| | ||| | |||||| || || |||| |
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| T |
38220532 |
agaaaaatttgattgcttacctgtgcacaaagctcggaaattttcaactgttttgggaacaacatctccaaataggccaataacaatccttccagcagat |
38220433 |
T |
|
| Q |
519 |
tcacccccagcttctacgtcaaagaaacatttggtagtaactttggcttgcag |
571 |
Q |
| |
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||||| ||| | |||| ||||||||| ||| | || |||||||||||||| |
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| T |
38220432 |
tcacctccaattactacatcaaagaaaaccttgcttgttactttggcttgcag |
38220380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 38220884 - 38220813
Alignment:
| Q |
19 |
acatacatgcaaaactctcatcttcgaaactagaaccatagatactaactccaccggttccctgcagccaat |
90 |
Q |
| |
|
||||||| |||||| |||||||||| || || |||||||||||| |||||||| |||||||||| ||||| |
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| T |
38220884 |
acatacaagcaaaattctcatcttcaaatttaccaccatagatactgactccaccagttccctgcatccaat |
38220813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 925 - 970
Target Start/End: Complemental strand, 9888995 - 9888950
Alignment:
| Q |
925 |
aaattacaaaaacatccctaaatgtgtcctttgttagtaattttat |
970 |
Q |
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| T |
9888995 |
aaattacaaaaacatccctaactgtgtctttcgtttgtaattttat |
9888950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 916 - 987
Target Start/End: Complemental strand, 30925808 - 30925736
Alignment:
| Q |
916 |
aaatttatcaaa-ttacaaaaacatccctaaatgtgtcctttgttagtaattttatggactaaattaactaac |
987 |
Q |
| |
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|||||||||||| ||| |||| |||||||||| ||||| ||| ||||||||||||||||| |||| |||||| |
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| T |
30925808 |
aaatttatcaaaattagaaaagcatccctaaacgtgtcttttattagtaattttatggaccgaattgactaac |
30925736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 925 - 968
Target Start/End: Original strand, 10107 - 10150
Alignment:
| Q |
925 |
aaattacaaaaacatccctaaatgtgtcctttgttagtaatttt |
968 |
Q |
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||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
10107 |
aaattacaaaaccatacctaaatgtgtcctttgttagtcatttt |
10150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 917 - 987
Target Start/End: Complemental strand, 26559560 - 26559490
Alignment:
| Q |
917 |
aatttatcaaa-ttacaaaaacatccctaaatgtgtcctttgttagtaattttatggactaaattaactaac |
987 |
Q |
| |
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||||||||||| || ||||||| |||||| |||||| ||||||||||||||||||||| ||||||| |||| |
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| T |
26559560 |
aatttatcaaaatttcaaaaacgtccctag-tgtgtcgtttgttagtaattttatggaccaaattaattaac |
26559490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 925 - 987
Target Start/End: Original strand, 728 - 790
Alignment:
| Q |
925 |
aaattacaaaaacatccctaaatgtgtcctttgttagtaattttatggactaaattaactaac |
987 |
Q |
| |
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||||| |||||| ||| |||| |||||| ||||||||||||||| ||||| ||||| |||||| |
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| T |
728 |
aaattgcaaaaatatctctaagtgtgtcttttgttagtaattttgtggaccaaattgactaac |
790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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