View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_104 (Length: 203)
Name: NF11809_high_104
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_104 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 5e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 1959250 - 1959434
Alignment:
| Q |
1 |
tgtaaagaaaagaaagtgatgttgatatccagagagagtaaacaataattaaagctagctgcgaagaaattatatgtttttacaaaggcatttcgataaa |
100 |
Q |
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| T |
1959250 |
tgtaaagaaaagaaagtgatgttgatatccagagagagtaaacaataattaaagctagctgcgaagaaattatatgcttttacaaaggcatttcgataaa |
1959349 |
T |
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| Q |
101 |
aagtgcgtacaatgggctctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataacc |
185 |
Q |
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| T |
1959350 |
aagtgcgtacaatgggctctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataacc |
1959434 |
T |
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Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2024288 - 2024213
Alignment:
| Q |
1 |
tgtaaagaaaagaaagtgatgttgatatccagagagagtaaacaataattaaagctagctgcgaagaaattatatg |
76 |
Q |
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| T |
2024288 |
tgtaaagaaaagaaagtgatggtgatatctagagagagtaaacactaatcaaagctagttgcgaagaaactatatg |
2024213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 2024164 - 2024078
Alignment:
| Q |
97 |
taaaaagtgcgtacaatgggctctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataacc |
185 |
Q |
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||||||||| |||||||| ||||||| || ||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||| |
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| T |
2024164 |
taaaaagtgtttacaatggactctcaatgt--atatagtttcttcaaagttaactttggttgacattttctctatctctaggtataacc |
2024078 |
T |
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