View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_11 (Length: 529)
Name: NF11809_high_11
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 55059944 - 55060243
Alignment:
| Q |
19 |
gtataatgtggtgcctatatactacaaaatcacacacagaacaattgtgatcagactccaacaatcttcatctctttctgatttgggctagcttgaactg |
118 |
Q |
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| T |
55059944 |
gtataatgtggtgcctatatactacaaaatcacacacagaacaattgtgatcagactccaacaatcttcatctctttctgatttgggctagcttgaactg |
55060043 |
T |
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| Q |
119 |
attcattcaatccaccatccacaaaatcacaccatcaatcctcttcttagatttaagttcagtaggttcaacaggataattcccagtgaaacaagcataa |
218 |
Q |
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| T |
55060044 |
attcattcaatccaccatccacagaatcacaccatcaatcctcttcttagatttaagttcagtaggttcaacaggataattcccagtgaaacaagcataa |
55060143 |
T |
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| Q |
219 |
cagaaattagaagaatcatcacccaacaacttcttcaaactatggataggtagaaaagcaagggaatcacaaccaataaattccttcatcccagccacac |
318 |
Q |
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| T |
55060144 |
cagaaattagaagaatcatcacccaacaacttcttcaaactatccataggtagaaaagcaagggaatcacaacgaataaattccttaatcccagccacac |
55060243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 313 - 519
Target Start/End: Original strand, 55060283 - 55060492
Alignment:
| Q |
313 |
ccacaccataataacaagaaccaataattggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaactacctcacaattttagatg- |
411 |
Q |
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| T |
55060283 |
ccacaccataataacaagaaccaataattggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaacaacctcgcaattttagatga |
55060382 |
T |
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| Q |
412 |
--ttgttcctctcacaattgaatcatcaacaaccacaacccttttctcttcaagaacagcacaaaccggcgaaagcttcaacttcacaccaaaatctcta |
509 |
Q |
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| T |
55060383 |
tgttgttcctctcacaattgaatcatcaacaaccacaacccttttctcttcaagaacaacacgaaccggcgaaagcttcaacttcacaccaaaatctcta |
55060482 |
T |
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| Q |
510 |
atcttctgtg |
519 |
Q |
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|||||||||| |
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| T |
55060483 |
atcttctgtg |
55060492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 313 - 517
Target Start/End: Original strand, 27356468 - 27356675
Alignment:
| Q |
313 |
ccacaccataataacaagaaccaataattggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaactacctcacaattttaga--- |
409 |
Q |
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| T |
27356468 |
ccacaccatagtaacaagaaccaataattggtggacttgcaattctcatgtgaacttcttttgcacctgcttccttaagcaacctcacaatcttggacga |
27356567 |
T |
|
| Q |
410 |
tgttgttcctctcacaattgaatcatcaacaaccacaacccttttctcttcaagaacagcacaaaccggcgaaagcttcaacttcacaccaaaatctcta |
509 |
Q |
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||||||||| ||||||||||| |||||||| || ||||||||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||| |
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| T |
27356568 |
tgttgttcccctcacaattgagtcatcaacgacaacaacccttttaccttcaagcacagcacgaacaggcgaaagcttcaacttcacaccaaaatcccta |
27356667 |
T |
|
| Q |
510 |
atcttctg |
517 |
Q |
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|| ||||| |
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| T |
27356668 |
attttctg |
27356675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 27356291 - 27356356
Alignment:
| Q |
181 |
taggttcaacaggataattcccagtgaaacaagcataacagaaattagaagaatcatcacccaaca |
246 |
Q |
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|||| |||||||| || ||||||| ||||||||||||||| ||||||| |||||||| |||||||| |
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| T |
27356291 |
taggctcaacagggtatttcccagagaaacaagcataacaaaaattaggagaatcattacccaaca |
27356356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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