View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_high_13 (Length: 492)

Name: NF11809_high_13
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_high_13
NF11809_high_13
[»] chr2 (3 HSPs)
chr2 (231-475)||(29678853-29679099)
chr2 (13-106)||(33538175-33538268)
chr2 (167-209)||(29679151-29679193)
[»] chr1 (2 HSPs)
chr1 (13-107)||(9388559-9388653)
chr1 (13-107)||(10366564-10366658)
[»] chr5 (5 HSPs)
chr5 (13-106)||(15434412-15434505)
chr5 (37-107)||(900884-900954)
chr5 (106-167)||(39074214-39074275)
chr5 (49-106)||(30839719-30839776)
chr5 (13-105)||(2250327-2250419)
[»] chr3 (3 HSPs)
chr3 (13-105)||(26847736-26847828)
chr3 (14-106)||(2043731-2043823)
chr3 (13-106)||(40034727-40034820)
[»] chr6 (6 HSPs)
chr6 (13-83)||(22995997-22996065)
chr6 (13-83)||(23792335-23792403)
chr6 (13-106)||(29396444-29396537)
chr6 (13-83)||(22957002-22957072)
chr6 (13-83)||(23831320-23831390)
chr6 (13-105)||(18141383-18141475)
[»] chr4 (3 HSPs)
chr4 (13-104)||(3684733-3684824)
chr4 (13-74)||(33152512-33152573)
chr4 (49-105)||(2728256-2728312)
[»] chr7 (3 HSPs)
chr7 (13-106)||(38174620-38174713)
chr7 (13-106)||(45849487-45849581)
chr7 (16-105)||(6494744-6494833)
[»] chr8 (2 HSPs)
chr8 (22-101)||(37819877-37819956)
chr8 (59-107)||(24511974-24512022)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 5e-88; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 231 - 475
Target Start/End: Complemental strand, 29679099 - 29678853
Alignment:
Q  231 aattcttcttgggcattttcttctacattag---gttcatagtgacaaacttccttgttttgttgcattggtggtgttttccaattggtattggaatctg 327  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||    
T  29679099 aattcttcttgggcattttcttctacattactatgttcatagtgacaaacttccttgttttgttgcattgatggtgttttccaattggtataggaatttg 29679000  T
Q  328 ttggaaatcttgagtttgaggcttgaaagttgtgacttttatttgaacgactttgagtataattatgtgagtcatgtcctctgaagttgcatctacatcc 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||||||| ||||||||||||| |||    
T  29678999 ttggaaatcttgagtttgaggcttgaaagttgtgacttttatttgaatgactttaagtataattgtgtgagccatgtcctctaaagttgcatctacctcc 29678900  T
Q  428 acgcatattacttccnnnnnnnnctaaggctaaggaagacgtgattat 475  Q
    |||||||||||||||        |||||||||||||||||||||||||    
T  29678899 acgcatattacttcc-tcttcttctaaggctaaggaagacgtgattat 29678853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 33538268 - 33538175
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctct 106  Q
    |||||| || |||||| |||||  ||||||||| | ||||||||| |||||||||||||||| |||||||| |||  ||| |||||||||||||    
T  33538268 gaggagtacggaaatcaaaatcatgcaaaatatcattaaaaatagtaaataagttgttggttgtacaatttgatttttcacatatcattcctct 33538175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 29679193 - 29679151
Alignment:
Q  167 ttttataagttacctcatggatttgtcatgagtggtttctccc 209  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  29679193 ttttacaagttacctcctggatttgtcatgagtggtttctccc 29679151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 9388653 - 9388559
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctctt 107  Q
    |||||||||| ||||||||||| | |||||||| | ||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||    
T  9388653 gaggagcacataaatcgaaatcagacaaaatatcattaaaaatagtaaataagttgttggttgtacaatttaattgttcacatatcattcctctt 9388559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 10366658 - 10366564
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctctt 107  Q
    |||||||||| |||||||||||    ||||||| | |||||||| ||||||||||||||||| |||||||| |||| |||  |||||||||||||    
T  10366658 gaggagcacataaatcgaaatcaaataaaatatcattaaaaataacaaataagttgttggttgtacaatttgattgttcacgtatcattcctctt 10366564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 15434505 - 15434412
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctct 106  Q
    |||||||||||||||| |||||  ||||||||| | ||||| |||||||||||||||||||| ||||||||  ||| ||| |||||||||||||    
T  15434505 gaggagcacagaaatcaaaatcaagcaaaatatcattaaaagtagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 15434412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 900954 - 900884
Alignment:
Q  37 gcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctctt 107  Q
    ||||||||| | |||||||||||||||||||||||||| ||||||||  ||| ||| ||||||||||||||    
T  900954 gcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctt 900884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 39074275 - 39074214
Alignment:
Q  106 ttatagcaatgacttcgtgattcaatcgtgaagcaaaatttcgggataataagcattatcct 167  Q
    ||||||||||| | |||||||||  ||||||||||| ||||||||||||||| ||| |||||    
T  39074275 ttatagcaatgccatcgtgattccctcgtgaagcaagatttcgggataataaacatcatcct 39074214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 30839776 - 30839719
Alignment:
Q  49 taaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctct 106  Q
    |||||||||||| ||| ||||||||  ||||||||| ||| ||| |||||||||||||    
T  30839776 taaaaatagcaagtaaattgttggtcgtacaatttagttgttcacatatcattcctct 30839719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 2250419 - 2250327
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctc 105  Q
    |||||| || |||||| |||||  ||||||||| | ||||||||  |||||| |||||| || |||||||| |||  ||| ||||||||||||    
T  2250419 gaggagtacggaaatcaaaatcatgcaaaatatcattaaaaataataaataaattgttgattgtacaatttgattcttcacatatcattcctc 2250327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 26847736 - 26847828
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctc 105  Q
    ||||||||| |||| | |||||  ||||||||| | |||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||    
T  26847736 gaggagcacggaaaacaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttgattgttcacatatcattcctc 26847828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 2043823 - 2043731
Alignment:
Q  14 aggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctct 106  Q
    ||||||||| |||||||||||   |||||||| | |||| ||||||||||||||||||||| ||||||||| ||  | | |||||||||||||    
T  2043823 aggagcacataaatcgaaatcaatcaaaatatcattaaagatagcaaataagttgttggttgtacaatttagttatttacatatcattcctct 2043731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 40034820 - 40034727
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctct 106  Q
    ||||||||| |||||  |||||  | ||||||||| ||||||||  |||||||||||||||| |||||||| | || ||| |||||||| ||||    
T  40034820 gaggagcacggaaattaaaatcatgtaaaatattattaaaaataataaataagttgttggttgtacaatttgaatgttcacatatcatttctct 40034727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 22996065 - 22995997
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaattt 83  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||  |||||||||||||||||||||    
T  22996065 gaggagcacataaatcgaaatcaggcaaaatattattaaaaatagcaa--aagttgttggttatacaattt 22995997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 23792335 - 23792403
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaattt 83  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||  |||||||||||||||||||||    
T  23792335 gaggagcacataaatcgaaatcaggcaaaatattattaaaaatagcaa--aagttgttggttatacaattt 23792403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 29396537 - 29396444
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctct 106  Q
    |||||||||| |||||||||||   |||||||| | |||||||||||||||||||||||||| ||||||||   || ||| |||||||||||||    
T  29396537 gaggagcacaaaaatcgaaatcaatcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggctgttcacatatcattcctct 29396444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 22957072 - 22957002
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaattt 83  Q
    |||||||||| |||||||||||  | ||||||||| |||||||||||| ||||||||||||| ||||||||    
T  22957072 gaggagcacataaatcgaaatcaagtaaaatattattaaaaatagcaagtaagttgttggttgtacaattt 22957002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 23831320 - 23831390
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaattt 83  Q
    |||||||||| |||||||||||  | ||||||||| |||||||||||| ||||||||||||| ||||||||    
T  23831320 gaggagcacataaatcgaaatcaagtaaaatattattaaaaatagcaagtaagttgttggttgtacaattt 23831390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 18141475 - 18141383
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctc 105  Q
    |||||| ||| |||||||||||  | ||||||||| ||||||||| |||||||||| ||||| ||| ||||  ||| ||| ||||||||||||    
T  18141475 gaggagtacataaatcgaaatcaagtaaaatattattaaaaatagaaaataagttgctggttgtacgatttggttgttcacatatcattcctc 18141383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 3684824 - 3684733
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcct 104  Q
    |||||||||| ||||||||||| | |||||||||| |||||||||||||||  ||||||||| ||||||||| ||| ||| |||| ||||||    
T  3684824 gaggagcacaaaaatcgaaatcagacaaaatattattaaaaatagcaaatatattgttggttttacaatttagttgttcacatattattcct 3684733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 33152512 - 33152573
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggtt 74  Q
    ||||||||| |||||| |||||  ||||||||| | ||||||||||||||||||||||||||    
T  33152512 gaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggtt 33152573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 2728312 - 2728256
Alignment:
Q  49 taaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctc 105  Q
    |||||||||||| ||||||||||||| || |||||| ||| ||| ||||||||||||    
T  2728312 taaaaatagcaagtaagttgttggttgtataatttagttgttcacatatcattcctc 2728256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 38174713 - 38174620
Alignment:
Q  13 gaggagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctct 106  Q
    ||||||||||||||||||||||  ||||||||||| |||||||| ||| |||||| |||||| ||||||||  ||| |||  ||||||||||||    
T  38174713 gaggagcacagaaatcgaaatcaagcaaaatattattaaaaatatcaagtaagttattggttgtacaatttggttgttcacgtatcattcctct 38174620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 45849487 - 45849581
Alignment:
Q  13 gaggagcacagaaatcgaaa-tcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctct 106  Q
    |||||||||| |||| |||| ||  ||||||||||| |||||||||||||||| || |||||| ||||||||  ||| |||  ||||||||||||    
T  45849487 gaggagcacataaattgaaaatcaagcaaaatattattaaaaatagcaaataaattattggttgtacaatttggttgttcacgtatcattcctct 45849581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 6494833 - 6494744
Alignment:
Q  16 gagcacagaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcattcctc 105  Q
    |||||| |||| | |||||  ||||||||| | ||||||||||||||||||| ||| || ||||||||  ||| ||| ||||||||||||    
T  6494833 gagcacggaaaacaaaatcatgcaaaatatcattaaaaatagcaaataagttattgattgtacaattttgttgttcacatatcattcctc 6494744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 37819877 - 37819956
Alignment:
Q  22 agaaatcgaaatcgggcaaaatattactaaaaatagcaaataagttgttggttatacaatttaattgatcatatatcatt 101  Q
    ||||||||||||| |  ||||||||| |||| ||||||||||| ||||||||| ||||||||| ||| ||| ||||||||    
T  37819877 agaaatcgaaatcagataaaatattattaaacatagcaaataaattgttggttgtacaatttagttgttcaaatatcatt 37819956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 24512022 - 24511974
Alignment:
Q  59 aaataagttgttggttatacaatttaattgatcatatatcattcctctt 107  Q
    |||||||||||||||| ||||||||  ||| ||| ||||||||||||||    
T  24512022 aaataagttgttggttgtacaatttggttgttcagatatcattcctctt 24511974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University