View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11809_high_16 (Length: 459)
Name: NF11809_high_16
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Original strand, 30121142 - 30121574
Alignment:
| Q |
11 |
cataggacaggttgttttctgttttctgtttagattttgtttgtaacgatttcttgtttcatatcttacctgtattcatgaaaatatttataatgattgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30121142 |
cataggacaggttgttttctgttttctgtttagattttgtttgtaacgatttcttgtttcatatcttacctgtattcatgaaaatatttataatgattgg |
30121241 |
T |
|
| Q |
111 |
tgtataactataaatgacagaaatttttgttcatcaaaaaataaataactgaaagaattaacatttttcaattaaagcatatgattgttgtaaatttcag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30121242 |
tgtataactataaatgacagaaatttttgttcatcaaaaaataaataactgaaagaattaacatttttcaattaaagcatatgattgttgtaaatttcag |
30121341 |
T |
|
| Q |
211 |
gctgttcatgattatgtaagtttaaaggttttttgttttgccaacaattacatgcatagacaaaatgggaaaatttagccccttaagttgattttttctg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
30121342 |
gctgttcatgattatgtaagtttaaaggttttttgttttgccaacaattacatgcatagacaaaatgggaaaatttagccctttaagttgattttatctg |
30121441 |
T |
|
| Q |
311 |
ttttaactttgttatgttaaactgagttttgtggtttaaatttggnnnnnnnntcatggttggttcattagcatcttcttgaatctttttctcttgtgtg |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30121442 |
ttttaactttgttatgttaaactgagttttgtggtttaaatttggaaaaaaaatcatggttggttcatcagcatcttcttgaatctttttctcttgtgtg |
30121541 |
T |
|
| Q |
411 |
gttttttcagaaatcttcttgtgcggtgattct |
443 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
30121542 |
gttttttcagaaatcttcatgtgcggtgattct |
30121574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University