View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_18 (Length: 454)
Name: NF11809_high_18
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 40451376 - 40451171
Alignment:
| Q |
15 |
atgaatttccgtttgaagcgctggcttgaagtgaaaggataaaaatattgctggcacaaaacactgtgaatttggctatgcactgtgactctgcatgctt |
114 |
Q |
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| T |
40451376 |
atgaatttccgtttgaagcgctggcttgaagtgaaaggataaaaatattgctggcacaaaacactg--aatttggctatgcactgtgactctgcatgctt |
40451279 |
T |
|
| Q |
115 |
gttgggcatggcttatgaattcagtactagcacttaccaagccacttgatagtataccaaggtgtcttaaaatcctttttagaattgaaaatttggttac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40451278 |
gttgggcatggcttatgaattcagtactagcacttaccaagccacttgatagtataccaaggtgtcctaaaatcctttttagaattgaaaatttggttac |
40451179 |
T |
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| Q |
215 |
attctaca |
222 |
Q |
| |
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|||||||| |
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| T |
40451178 |
attctaca |
40451171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 298 - 430
Target Start/End: Complemental strand, 40451171 - 40451038
Alignment:
| Q |
298 |
acagttgagttattaaagttgatgtgtccgattcaaattttaaatcagatatatcaa-cttttgttaatccaactttatttagttttcatcttgaactcc |
396 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| |||||| |
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| T |
40451171 |
acagttgagttattaaagttgatgtgtccgatacaaattttaaatcaaatatatcaaacttttgttgatccaactttatttagttttcatcttaaactcc |
40451072 |
T |
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| Q |
397 |
aaatgacatatcccttatccattggaaattaaac |
430 |
Q |
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| T |
40451071 |
aaatgacatatcccttatccattggaaattaaac |
40451038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 48729644 - 48729577
Alignment:
| Q |
296 |
agacagttgagttattaaa-gttgatgtgtccgattcaaattttaaatcagatatatcaacttttgtt |
362 |
Q |
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| T |
48729644 |
agacatttgagttaataaaagttgatgtatctgattaaaattttgaattagatatatcaacttttgtt |
48729577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 21537911 - 21537961
Alignment:
| Q |
312 |
aaagttgatgtgtccgattcaaattttaaatcagatatatcaacttttgtt |
362 |
Q |
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||||||||||| || ||||||||||||| ||||||| ||||||||||||| |
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| T |
21537911 |
aaagttgatgtatctgattcaaattttagttcagatacatcaacttttgtt |
21537961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 373
Target Start/End: Original strand, 26026856 - 26026888
Alignment:
| Q |
341 |
atcagatatatcaacttttgttaatccaacttt |
373 |
Q |
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| T |
26026856 |
atcagatatatcaacttttgttaacccaacttt |
26026888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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