View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11809_high_21 (Length: 452)
Name: NF11809_high_21
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 153 - 433
Target Start/End: Original strand, 45369502 - 45369782
Alignment:
| Q |
153 |
ttcttcttccttaatgtcgtaataataatgattcgcatttcaattttgcaggtatgacgacgactgatgaacgtgaaattcagaaatcatactggattca |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45369502 |
ttcttcttccttaatgtcgtaataataatgattcgcatttcaattttgcaggtatgacgacgactgatgaacgtgaaattcagaaatcatactggattca |
45369601 |
T |
|
| Q |
253 |
gcattgtgctgatctctctgtcgaggctatgatgctcgattccaaagcttctgatctcgacaaggaagaaagacctgaggtcatctttcacatttcttaa |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45369602 |
gcattgtgctgatctctctgtcgaggctatgatgctcgattccaaagcttctgatctcgacaaggaagaaagacctgaggtcatctttcacatttcttaa |
45369701 |
T |
|
| Q |
353 |
ttcatcccaatcataatcttaatttaatttaataatagatctaaatctaagctcagctacattaagatccaattgcatctt |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45369702 |
ttcatcccaatcataatcttaatttaatttaataatagatctaaatctaatctcagctacattaagatccaattgcatctt |
45369782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 45369362 - 45369485
Alignment:
| Q |
1 |
gagcttctaaccgtagatccaggagtttctcaaggtctcgcctcgctattgaaggcacttaatcaaacaattcacatttcattcttaatcaatccaatcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45369362 |
gagcttctaaccgtagatccaggagtttctcaaggtctcgcctcgctatcgaaggcacttaatcaaacaattcacatttcattcttaatcaatccaatcc |
45369461 |
T |
|
| Q |
101 |
atggcttcaccaccaggtataatg |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
45369462 |
atggcttcaccaccaggtataatg |
45369485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University