View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_23 (Length: 437)
Name: NF11809_high_23
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_23 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 221 - 437
Target Start/End: Complemental strand, 5973065 - 5972844
Alignment:
| Q |
221 |
aagtaaatggtaatgagtaatgagggaagatgaaaatggaaagatagtttaagggttgtgattaaataagataaagtggtcgttgttgtgtgtagggtag |
320 |
Q |
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| T |
5973065 |
aagtaaatggtaatgagtaatgagggaagatgaaaatggaaagatatgttaagggttgtgattaaataagataaagtggtcgttgttgtgtgtagggtag |
5972966 |
T |
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| Q |
321 |
gtttgggttttgggtttctttgtta-----tatttcaattcaattaatgcaaagttaggaattatttttgggaaaaatgtaaagatctttgttttgagtt |
415 |
Q |
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| T |
5972965 |
gtttggtttttgggtttctttgttatggagtatttcaattcaattaatgcaaagttaggaattttttttgggaaaaatgtaaaaatctttgttttgagtt |
5972866 |
T |
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| Q |
416 |
tgaagaatgtgatgtgatgatg |
437 |
Q |
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| T |
5972865 |
tgaagaatgtgatgtgatgatg |
5972844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 5973268 - 5973115
Alignment:
| Q |
18 |
caagagaggtacaaaacgaagaaaaatccatctgggtttttctctattcaatcaaaacaagtaaagattgaaacttttcagtgcttagagtacatttatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5973268 |
caagagaggtacaaaacgaagaaaaatccatctgggtttttctctattcaatcaaaacaagtaaagattgaaacttttcagtgcttagagtacatttatc |
5973169 |
T |
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| Q |
118 |
caaaagggtaacgttggaattggaattaaattgatattatggaaacagttacat |
171 |
Q |
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| T |
5973168 |
caaaagggtaacgttggaattggaattaaattgatattatggaaacagttacat |
5973115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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