View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_29 (Length: 398)
Name: NF11809_high_29
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_29 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 19907329 - 19907709
Alignment:
| Q |
18 |
ctcttgtcacctcttgtttctccttgcatacaccttttagttagtttccctcctcaagagacacaccttgtcctgttttgcaaggatgccgcctgtcggc |
117 |
Q |
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| T |
19907329 |
ctcttgtcacctcttgtttctccttgcatacaccttttagttagtctccctcctcaagagacacaccttgtcctgttttgcaaggatgccgcctgtcggc |
19907428 |
T |
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| Q |
118 |
tgccttattctccctttcaggttgatattgaatcttgaaatcaatccccacaatttggagatccacttctactgctcctcacacataaataaatctttga |
217 |
Q |
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| T |
19907429 |
tgccttattctccctttcaggttgatactgaatcttgaaatcaatccccacaatttggagatccacttctactgctcctcacacataaataaatctttga |
19907528 |
T |
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| Q |
218 |
tccgctgagaacttcaaagttttctgaccatagtgcaccttgaaatgtccctgttttttaataacaagttcagtgaccatcaacactctctcacgcactg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
19907529 |
tccgctgagaacttcaaagttttctgaccatagtgcaccttgaaatgtccctgttttttaataacaagttcagtgaccatcaacgctctctcacacactg |
19907628 |
T |
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| Q |
318 |
atttattttggcccttaaagtttttcttgcattaatactcaccctactccttttcataattataattatctatatcaattt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19907629 |
atttattttggcccttaaagtttttcttgcattaatactcaccctaccccttttcataattataattatctatatcaattt |
19907709 |
T |
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