View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_high_3 (Length: 790)

Name: NF11809_high_3
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_high_3
NF11809_high_3
[»] chr1 (36 HSPs)
chr1 (170-776)||(9464243-9464849)
chr1 (2-549)||(9488506-9489054)
chr1 (1-172)||(9463911-9464082)
chr1 (569-772)||(9489100-9489303)
chr1 (57-282)||(9233932-9234158)
chr1 (52-285)||(9318160-9318394)
chr1 (57-282)||(9384236-9384462)
chr1 (458-524)||(11011306-11011372)
chr1 (461-528)||(10983933-10984000)
chr1 (52-165)||(9319908-9320022)
chr1 (60-165)||(9350233-9350339)
chr1 (458-524)||(11008144-11008210)
chr1 (458-524)||(11033597-11033663)
chr1 (393-522)||(9317923-9318052)
chr1 (125-288)||(9453691-9453854)
chr1 (458-525)||(10903842-10903909)
chr1 (140-279)||(11004898-11005037)
chr1 (80-294)||(8964547-8964761)
chr1 (80-294)||(8999698-8999912)
chr1 (51-168)||(10974251-10974369)
chr1 (458-524)||(11004650-11004716)
chr1 (217-279)||(11007900-11007962)
chr1 (217-279)||(11011062-11011124)
chr1 (80-168)||(9096796-9096884)
chr1 (123-279)||(10914667-10914823)
chr1 (125-168)||(8920776-8920819)
chr1 (52-150)||(9255033-9255132)
chr1 (458-525)||(10915005-10915072)
chr1 (462-525)||(11028234-11028297)
chr1 (253-288)||(49725148-49725183)
chr1 (246-288)||(9486056-9486098)
chr1 (217-279)||(10903598-10903660)
chr1 (217-279)||(10979496-10979558)
chr1 (247-288)||(8920898-8920939)
chr1 (60-168)||(8932115-8932224)
chr1 (247-288)||(8956225-8956266)
[»] chr6 (1 HSPs)
chr6 (45-165)||(15927186-15927307)
[»] chr4 (2 HSPs)
chr4 (395-540)||(27692776-27692921)
chr4 (57-171)||(27692431-27692546)
[»] chr3 (1 HSPs)
chr3 (52-165)||(9159598-9159712)


Alignment Details
Target: chr1 (Bit Score: 578; Significance: 0; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 170 - 776
Target Start/End: Original strand, 9464243 - 9464849
Alignment:
Q  170 gtaagcgacacaatgctattgtccgttggatataactttgctagtaaaaaatccgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9464243 gtaagcgacacaatgctattgtccgttggatataactttgctagtcaaaaatccgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggct 9464342  T
Q  270 ttatgtcaaaatgcaaaatcctcatgtcacgccctctatgtagatattcaataccacgcgctacaccaagagctatatcaaacattttctcagaactcaa 369  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9464343 ttatgtcaaaatgcaaaatcctcatgtcacaccctctatgtagatattcaataccacgcgctacaccaagagctatatcaaacattttctcagaactcaa 9464442  T
Q  370 agaacccattctttctcttgagaaaatgtgtttttcaagagaatcgttaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagcca 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9464443 agaacccattctttctcttgagaaaatgtgtttttcaagagaatcgttaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagcca 9464542  T
Q  470 attaggtgaaccacattaacatggtgaatcgttccaatggtagcaacttcattgatgaattcctgtccatttgctcttgatttaatttccacctagcaat 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9464543 attaggtgaaccacattaacatggtgaatcgttccaatggtagcaacttcattgatgaattcctgtccatttgctcttgatttaatttccacctagcaat 9464642  T
Q  570 tgtcctttgtaaacagaaccatagccaccttcgccaagtttatcattaaattcttttgtcannnnnnnaatgtccgagtaagagtatcttattggcatga 669  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  9464643 tgtcctttgtaaacagaaccatagccaccttcgccaagtttatcattaaattcttttgtcatttttttaatgtccgagtaagagtatcttattggcatga 9464742  T
Q  670 gattattgtgagatttaagaaactcttcaactgaatcatatgcagataaatgcctccttctccatttatatgccatgtacatcgggataaatagtaaacc 769  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9464743 gattattgtgagatttaagaaactcttcaactgaatcatatgcagataaatgcctccttctccatttatatgccatgtacatcgggataaatagtaaacc 9464842  T
Q  770 acctatg 776  Q
    |||||||    
T  9464843 acctatg 9464849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 2 - 549
Target Start/End: Original strand, 9488506 - 9489054
Alignment:
Q  2 gaaataaacttgactcttatgatcttcactctcattcatgttccttctcctactcgccatttccattaacaacattccaa-gctataaacatctgctttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9488506 gaaataaacttgactcttatgatcttcactctcattcatgttccttctcctactcgccatttccattaacaacattccaaagctataaacatctgctttg 9488605  T
Q  101 tacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatagttcctcttgcagctgtaagcgacacaatgctattgtccgttggat 200  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9488606 tacgatactcctccaatattcttatagaacaattctggtgccatgtatcccatagttcctcttgcagctgtaagagacacaatgctattgtccgttggat 9488705  T
Q  201 ataactttgctagtaaaaaatccgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaaatgcaaaatcctcatgtcacg 300  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9488706 ataactttgctagtctaaaatctgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaaatgcaaaatcctcatgtcaca 9488805  T
Q  301 ccctctatgtagatattcaataccacgcgctacaccaagagctatatcaaacattttctcagaactcaaagaacccattctttctcttgagaaaatgtgt 400  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9488806 ccctctatgtagatattcaataccacgggctacaccaagagctatatcaaacattttctcagaactcaaagaacccattctttctcttgagaaaatgtgc 9488905  T
Q  401 ttttcaagagaatcgttaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacattaacatggtgaatcg 500  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9488906 ttttcaagagaaccattaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacgttaacatggtgaatcg 9489005  T
Q  501 ttccaatggtagcaacttcattgatgaattcctgtccatttgctcttga 549  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9489006 ttccaatcgtagcaacttcattgatgaattcctgtccatttgctcttga 9489054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 9463911 - 9464082
Alignment:
Q  1 tgaaataaacttgactcttatgatcttcactctcattcatgttccttctcctactcgccatttccattaacaacattccaagctataaacatctgctttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9463911 tgaaataaacttgactcttatgatcttcactctcattcatgttccttctcctactcgccatttccattaacaacattccaagctataaacatctgctttg 9464010  T
Q  101 tacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatagttcctcttgcagctgta 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9464011 tacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatagttcctcttgcagctgta 9464082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 569 - 772
Target Start/End: Original strand, 9489100 - 9489303
Alignment:
Q  569 ttgtcctttgtaaacagaaccatagccaccttcgccaagtttatcattaaattcttttgtcannnnnnnaatgtccgagtaagagtatcttattggcatg 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||       |||||| ||||||||||||||||||||||||    
T  9489100 ttgtcctttgtaaacagaaccatagccaccttcgccaagtttatccttaaatccttttgtcatttttttaatgtctgagtaagagtatcttattggcatg 9489199  T
Q  669 agattattgtgagatttaagaaactcttcaactgaatcatatgcagataaatgcctccttctccatttatatgccatgtacatcgggataaatagtaaac 768  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9489200 agattattgtgagatttaagaaactcttcaactgaatcatatgccgataaatgcctccttctccatttatatgccatgtacatcgggataaatagtaaac 9489299  T
Q  769 cacc 772  Q
    ||||    
T  9489300 cacc 9489303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 57 - 282
Target Start/End: Complemental strand, 9234158 - 9233932
Alignment:
Q  57 gccatttccattaacaacattccaag-ctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatag 155  Q
    ||||||||||| || | ||||||||  || || ||||| ||||||||||| ||||| ||||| || || |||||||| || || |||||||| |||| ||    
T  9234158 gccatttccatcaaaagcattccaaaactgtatacatcagctttgtacgacactccaccaatatttttgtagaacaattcaggagccatgtaacccaaag 9234059  T
Q  156 ttcctcttgcagctgtaagcgacacaatgctattgtccgttggatataactttgctagtaaaaaatccgaaacctttggagtgaagtttacgtcaagaag 255  Q
    |||||||||| || || | ||  |||||||||| || |   || || | |||||| |||  |||||||||||||||||||  ||| | | |||| |||||    
T  9234058 ttcctcttgccgcagttaacggaacaatgctatcgttcacagggtaaagctttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaag 9233959  T
Q  256 aatgttatgaggctttatgtcaaaatg 282  Q
    ||| ||||||||||| || ||||||||    
T  9233958 aatattatgaggcttgatatcaaaatg 9233932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 285
Target Start/End: Complemental strand, 9318394 - 9318160
Alignment:
Q  52 tactcgccatttccattaacaacattccaa-gctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcc 150  Q
    |||| ||||||||||| || | |||||||| |||||| ||||| || ||||| |||||||||||||| || || |||||||| || || |||||||||||    
T  9318394 tacttgccatttccatcaaaagcattccaaagctatatacatcggccttgtaggatactcctccaatatttttgtagaacaattcaggagccatgtatcc 9318295  T
Q  151 catagttcctcttgcagctgtaagcgacacaatgctattgtccgttggatataactttgctagtaaaaaatccgaaacctttggagtgaagtttacgtca 250  Q
     || |||||||| || || || |  |  ||||||||| ||||  ||||||| | |||||| ||   ||| || ||||| || ||| | |||||  | |||    
T  9318294 aattgttcctctagctgcagttaaagtgacaatgctaatgtcatttggataaagctttgccagaccaaagtctgaaactttgggaataaagttctcatca 9318195  T
Q  251 agaagaatgttatgaggctttatgtcaaaatgcaa 285  Q
    ||||| |||||||| ||||| || |||||||||||    
T  9318194 agaaggatgttatggggcttgatatcaaaatgcaa 9318160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 282
Target Start/End: Original strand, 9384236 - 9384462
Alignment:
Q  57 gccatttccattaacaacattccaa-gctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatag 155  Q
    ||||||||||| || | |||||||| |||||| ||||| || ||||| || ||||| ||||| || || |||||||  || || |||||||| |||| ||    
T  9384236 gccatttccatcaaaagcattccaaagctatatacatcagccttgtaagacactccaccaatatttttgtagaacagttcaggagccatgtaacccaaag 9384335  T
Q  156 ttcctcttgcagctgtaagcgacacaatgctattgtccgttggatataactttgctagtaaaaaatccgaaacctttggagtgaagtttacgtcaagaag 255  Q
    |||||||||| || || |  |  |||||||||| || |   ||||||| |||||| |||  |||||||||||||||||||   || | | |||| |||||    
T  9384336 ttcctcttgccgcagttaaggtaacaatgctatcgttcacaggatatagctttgcaagtccaaaatccgaaacctttggaacaaactcttcgtctagaag 9384435  T
Q  256 aatgttatgaggctttatgtcaaaatg 282  Q
    ||| ||||||||||| || ||||||||    
T  9384436 aatattatgaggcttgatatcaaaatg 9384462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 458 - 524
Target Start/End: Original strand, 11011306 - 11011372
Alignment:
Q  458 acacaaaagccaattaggtgaaccacattaacatggtgaatcgttccaatggtagcaacttcattga 524  Q
    |||||||| ||||| || || ||||||||||||||||||||| | ||||||||||||||||||||||    
T  11011306 acacaaaaaccaatgagctgcaccacattaacatggtgaatcctaccaatggtagcaacttcattga 11011372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 461 - 528
Target Start/End: Original strand, 10983933 - 10984000
Alignment:
Q  461 caaaagccaattaggtgaaccacattaacatggtgaatcgttccaatggtagcaacttcattgatgaa 528  Q
    ||||| ||||| ||||| ||||||||||||||||||||| | ||||||||  ||||||||||||||||    
T  10983933 caaaaaccaataaggtgtaccacattaacatggtgaatcctaccaatggtgacaacttcattgatgaa 10984000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 9319908 - 9320022
Alignment:
Q  52 tactcgccatttccattaacaacattcc-aagctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcc 150  Q
    |||| ||||||||||| || | |||||| |||||||| ||||| || ||||| |||||||||||||| || || |||||||| || || ||||| |||||    
T  9319908 tacttgccatttccatcaaaagcattccgaagctatatacatcagccttgtaggatactcctccaatatttttgtagaacaattcaggagccatatatcc 9320007  T
Q  151 catagttcctcttgc 165  Q
     || |||||||||||    
T  9320008 aattgttcctcttgc 9320022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 9350233 - 9350339
Alignment:
Q  60 atttccattaacaacattcc-aagctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatagttc 158  Q
    |||||||| || | |||||| |||||||| ||||| || ||||| |||||||||||||| || || ||||||||||| || ||||| ||||| || ||||    
T  9350233 atttccatcaaaagcattccgaagctatatacatcagccttgtaggatactcctccaatatttttgtagaacaactcaggagccatatatccaattgttc 9350332  T
Q  159 ctcttgc 165  Q
    |||||||    
T  9350333 ctcttgc 9350339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 524
Target Start/End: Original strand, 11008144 - 11008210
Alignment:
Q  458 acacaaaagccaattaggtgaaccacattaacatggtgaatcgttccaatggtagcaacttcattga 524  Q
    ||||| || ||||| || || ||||||||||||||||||||| | ||||||||||||||||||||||    
T  11008144 acacagaaaccaatgagttgtaccacattaacatggtgaatcctaccaatggtagcaacttcattga 11008210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 524
Target Start/End: Original strand, 11033597 - 11033663
Alignment:
Q  458 acacaaaagccaattaggtgaaccacattaacatggtgaatcgttccaatggtagcaacttcattga 524  Q
    |||||||| ||||| || || ||||||||||||||||| ||| | ||||||||||||||||||||||    
T  11033597 acacaaaaaccaatgagttgtaccacattaacatggtggatcctaccaatggtagcaacttcattga 11033663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 393 - 522
Target Start/End: Complemental strand, 9318052 - 9317923
Alignment:
Q  393 aaatgtgtttttcaagagaatcgttaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacattaacatg 492  Q
    |||||| ||| ||||||||  |||| |||||||| |||||||||||||| | ||||| | |||||| |||||| ||||| ||   |||||||||  ||||    
T  9318052 aaatgtatttatcaagagagccgttgggcatgaattcataaacaagtgcacgttttgatctctcaaaacaaaaaccaataagtctaaccacatttgcatg 9317953  T
Q  493 gtgaatcgttccaatggtagcaacttcatt 522  Q
    ||| ||  |||| ||||| |||||||||||    
T  9317952 gtgtattcttcctatggttgcaacttcatt 9317923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 125 - 288
Target Start/End: Complemental strand, 9453854 - 9453691
Alignment:
Q  125 tagaacaactctggtgccatgtatcccatagttcctcttgcagctgtaagcgacacaatgctattgtccgttggatataactttgctagtaaaaaatccg 224  Q
    |||||||| || || |||||||| || || ||||||||||| ||||| |  |  ||||||||||||||  | ||||| | |||||| ||   |||||| |    
T  9453854 tagaacaattcaggagccatgtaaccaattgttcctcttgctgctgtcaaagcgacaatgctattgtcaataggataaagctttgcaagaccaaaatctg 9453755  T
Q  225 aaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaaatgcaaaat 288  Q
    |||| || ||  |||| ||| |||||||||| ||||| |||||||| || ||||||||||||||    
T  9453754 aaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaat 9453691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 458 - 525
Target Start/End: Original strand, 10903842 - 10903909
Alignment:
Q  458 acacaaaagccaattaggtgaaccacattaacatggtgaatcgttccaatggtagcaacttcattgat 525  Q
    |||||||| ||||| || || ||||||||||| ||||||||| | || ||||||||||||||||||||    
T  10903842 acacaaaatccaataagttgtaccacattaacgtggtgaatcctaccgatggtagcaacttcattgat 10903909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 279
Target Start/End: Complemental strand, 11005037 - 11004898
Alignment:
Q  140 gccatgtatcccatagttcctcttgcagctgtaagcgacacaatgctattgtccgttggatataactttgctagtaaaaaatccgaaacctttggagtga 239  Q
    ||||||||||| || ||||||||||| || || |  ||||||||||| ||||| || ||| | | | | |||| |  |||||| ||||| |||||| |||    
T  11005037 gccatgtatccaatggttcctcttgctgcagttaaggacacaatgcttttgtctgtaggagaaaccctagctaatccaaaatcagaaacttttggattga 11004938  T
Q  240 agtttacgtcaagaagaatgttatgaggctttatgtcaaa 279  Q
    | ||| | |||||||| ||||||||||||||||| |||||    
T  11004937 aattttcatcaagaaggatgttatgaggctttatatcaaa 11004898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 294
Target Start/End: Original strand, 8964547 - 8964761
Alignment:
Q  80 aagctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatagttcctcttgcagctgtaagcgaca 179  Q
    |||||||||||||| || || || || ||||| ||||| || ||||||||||| ||||| ||||| ||||| || || |||||||| ||||| |  |  |    
T  8964547 aagctataaacatcagccttataggacactcccccaatatttttatagaacaattctggagccatatatccaatggtacctcttgccgctgtcattgtga 8964646  T
Q  180 caatgctattgtccgttggatataactttgctagtaaaaaatccgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaa 279  Q
    |||||||||| ||    ||||||| ||| || | |  ||| || || || ||||| ||||| ||  | |||||||| ||||| |||||||| || |||||    
T  8964647 caatgctattctctacaggatatagcttagccaatccaaagtcagagacttttggggtgaaattctcatcaagaaggatgttgtgaggcttaatatcaaa 8964746  T
Q  280 atgcaaaatcctcat 294  Q
    |||||||||| ||||    
T  8964747 atgcaaaatcttcat 8964761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 294
Target Start/End: Original strand, 8999698 - 8999912
Alignment:
Q  80 aagctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatagttcctcttgcagctgtaagcgaca 179  Q
    |||||||||||||| || || || || ||||| ||||| || ||||||||||| ||||| ||||| ||||| || || |||||||| || || |  |  |    
T  8999698 aagctataaacatcagccttataagacactcccccaatatttttatagaacaattctggagccatatatccaatggtacctcttgccgcagtcattgtga 8999797  T
Q  180 caatgctattgtccgttggatataactttgctagtaaaaaatccgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaa 279  Q
    |||||||||| |||   ||||||| ||| || | |   || || || || ||||| ||||||||| | |||||||| ||||| |||||||| || |||||    
T  8999798 caatgctattctccacgggatatagcttagccaatccgaagtcagagacttttggtgtgaagttttcatcaagaaggatgttgtgaggcttgatatcaaa 8999897  T
Q  280 atgcaaaatcctcat 294  Q
    ||| |||||| ||||    
T  8999898 atgtaaaatcttcat 8999912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 10974251 - 10974369
Alignment:
Q  51 ctactcgccatttccattaacaacattcc-aagctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatc 149  Q
    ||||||||||| |||||||||||||| || |||||||| ||||| |||||||| |||| |   ||||| ||  | |||||||  || || ||||||||||    
T  10974251 ctactcgccatctccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaatatttctgtagaacagttcaggggccatgtatc 10974350  T
Q  150 ccatagttcctcttgcagc 168  Q
    | || ||||||||||||||    
T  10974351 caatcgttcctcttgcagc 10974369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 524
Target Start/End: Complemental strand, 11004716 - 11004650
Alignment:
Q  458 acacaaaagccaattaggtgaaccacattaacatggtgaatcgttccaatggtagcaacttcattga 524  Q
    |||||||| ||||| || || |||||||| |||||||||||| | |||||||||| |||||||||||    
T  11004716 acacaaaatccaatgagttgtaccacattgacatggtgaatcctaccaatggtagtaacttcattga 11004650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 11007900 - 11007962
Alignment:
Q  217 aaaatccgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaa 279  Q
    |||||| ||||| |||||| |||| ||| | |||||||| |||||||||||||||||||||||    
T  11007900 aaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatgtcaaa 11007962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 11011062 - 11011124
Alignment:
Q  217 aaaatccgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaa 279  Q
    |||||| ||||| |||||| |||| ||| | |||||||||||||||||||||||||| |||||    
T  11011062 aaaatcagaaacttttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaa 11011124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 9096884 - 9096796
Alignment:
Q  80 aagctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatagttcctcttgcagc 168  Q
    |||||||||||||| ||||| || || ||||| ||||| || || |||||||| ||||| ||||| ||||| || || |||||||||||    
T  9096884 aagctataaacatcagctttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattgtacctcttgcagc 9096796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 279
Target Start/End: Original strand, 10914667 - 10914823
Alignment:
Q  123 tatagaacaactctggtgccatgtatcccatagttcctcttgcagctgtaagcgacacaatgctattgtccgttggatataactttgctagtaaaaaatc 222  Q
    ||||||| || || || ||||| ||||| || ||||||||||| || || |  ||||||||||| || || || ||| | | | | ||||||  ||||||    
T  10914667 tatagaataattcaggggccatatatccgatggttcctcttgctgcagttaatgacacaatgcttttatctgtaggagaaagcctggctagtccaaaatc 10914766  T
Q  223 cgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaa 279  Q
     ||||| |||||| |||| ||| | |||||||| ||||||||||||||||| |||||    
T  10914767 agaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaa 10914823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 8920776 - 8920819
Alignment:
Q  125 tagaacaactctggtgccatgtatcccatagttcctcttgcagc 168  Q
    ||||||||||||||||||||||| || || ||||||||||||||    
T  8920776 tagaacaactctggtgccatgtaaccaattgttcctcttgcagc 8920819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 9255132 - 9255033
Alignment:
Q  52 tactcgccatttccattaacaacattccaa-gctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcc 150  Q
    |||| |||||||| || || | |||||||| |||||| ||||| || |||||||||||||||||||| || |  |||||||| || || |||||||||||    
T  9255132 tacttgccatttcaatcaaaagcattccaaagctatatacatcggccttgtacgatactcctccaatattttggtagaacaattcaggagccatgtatcc 9255033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 525
Target Start/End: Original strand, 10915005 - 10915072
Alignment:
Q  458 acacaaaagccaattaggtgaaccacattaacatggtgaatcgttccaatggtagcaacttcattgat 525  Q
    |||||||| ||||| |||||  |||||||||||||||||||| | || |||||  |||||||||||||    
T  10915005 acacaaaaaccaataaggtgtgccacattaacatggtgaatcctaccgatggtgacaacttcattgat 10915072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 525
Target Start/End: Complemental strand, 11028297 - 11028234
Alignment:
Q  462 aaaagccaattaggtgaaccacattaacatggtgaatcgttccaatggtagcaacttcattgat 525  Q
    |||| ||||| || || |||||||||| |||||||||| | ||||||||||||| |||||||||    
T  11028297 aaaaaccaatgagttgtaccacattaagatggtgaatcctaccaatggtagcaatttcattgat 11028234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 49725183 - 49725148
Alignment:
Q  253 aagaatgttatgaggctttatgtcaaaatgcaaaat 288  Q
    ||||||||||||||| ||||||||||||||||||||    
T  49725183 aagaatgttatgaggttttatgtcaaaatgcaaaat 49725148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 9486098 - 9486056
Alignment:
Q  246 cgtcaagaagaatgttatgaggctttatgtcaaaatgcaaaat 288  Q
    |||||||||||||||| |||||||| || ||||||||||||||    
T  9486098 cgtcaagaagaatgttgtgaggcttaatatcaaaatgcaaaat 9486056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 10903598 - 10903660
Alignment:
Q  217 aaaatccgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaa 279  Q
    |||||| ||||| |||||| ||||  || | |||||||||||||||||||||||||| |||||    
T  10903598 aaaatcagaaacttttggattgaaactttcatcaagaagaatgttatgaggctttatatcaaa 10903660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 10979496 - 10979558
Alignment:
Q  217 aaaatccgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaa 279  Q
    |||||| ||||| |||||| |||| ||| | |||||||| ||||||||||||||||| |||||    
T  10979496 aaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaa 10979558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 8920898 - 8920939
Alignment:
Q  247 gtcaagaagaatgttatgaggctttatgtcaaaatgcaaaat 288  Q
    ||||||||| |||||||||||||| ||||||||||| |||||    
T  8920898 gtcaagaagtatgttatgaggcttgatgtcaaaatgtaaaat 8920939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 8932115 - 8932224
Alignment:
Q  60 atttccattaacaacattccaa-gctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatagttc 158  Q
    ||||||||||| | |||||||| |||||| ||||| || || || || |||   ||||| || || |||||||| |||||||||||||| || || ||||    
T  8932115 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 8932214  T
Q  159 ctcttgcagc 168  Q
    ||||||||||    
T  8932215 ctcttgcagc 8932224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 8956225 - 8956266
Alignment:
Q  247 gtcaagaagaatgttatgaggctttatgtcaaaatgcaaaat 288  Q
    |||||||||||||||||||||||| || |||||||| |||||    
T  8956225 gtcaagaagaatgttatgaggcttgatatcaaaatgtaaaat 8956266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 165
Target Start/End: Complemental strand, 15927307 - 15927186
Alignment:
Q  45 cttctcctactcgccatttccattaacaacattccaa-gctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgcca 143  Q
    |||||| |||| ||||||||||| || | |||||||| |||||| ||||| || || ||||| ||||||||||| || || ||||| || || || ||||    
T  15927307 cttctcttacttgccatttccatcaaaagcattccaaagctatatacatcggccttatacgaaactcctccaatatttttgtagaataattcaggagcca 15927208  T
Q  144 tgtatcccatagttcctcttgc 165  Q
    ||||||| || |||||||||||    
T  15927207 tgtatccaatcgttcctcttgc 15927186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 395 - 540
Target Start/End: Original strand, 27692776 - 27692921
Alignment:
Q  395 atgtgtttttcaagagaatcgttaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacattaacatggt 494  Q
    |||||||| ||||||||| | |||||||||||||| ||||| || |||   |||||| | ||| |||| || ||||  || || ||||| || |||||      
T  27692776 atgtgtttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcagcacagaatccaaccagttgcaccacgttcacatgac 27692875  T
Q  495 gaatcgttccaatggtagcaacttcattgatgaattcctgtccatt 540  Q
    ||||  |||||||||| ||||||||||||||||| || ||||||||    
T  27692876 gaattcttccaatggttgcaacttcattgatgaagtcttgtccatt 27692921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 27692431 - 27692546
Alignment:
Q  57 gccatttccattaacaacattccaag-ctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcccatag 155  Q
    ||||||||||||| || ||||||||  ||||||||||| |||||||  || |    |||||||||||| || |||||||| || |||||||| ||||| |    
T  27692431 gccatttccattagcatcattccaaaactataaacatcagctttgtgagagatgtttccaatgttcttgtataacaactcaggagccatgtaccccattg 27692530  T
Q  156 ttcctcttgcagctgt 171  Q
    |||||||||| |||||    
T  27692531 ttcctcttgccgctgt 27692546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 9159598 - 9159712
Alignment:
Q  52 tactcgccatttccattaacaacattccaag-ctataaacatctgctttgtacgatactcctccaatgttcttatagaacaactctggtgccatgtatcc 150  Q
    |||| ||||||||||| || | ||||||||  ||||||||||| || ||||| |||||||| ||||| || || ||||||||||| || ||||| || ||    
T  9159598 tacttgccatttccatcaaaagcattccaaaactataaacatcagccttgtatgatactccaccaatatttttgtagaacaactcgggagccatataacc 9159697  T
Q  151 catagttcctcttgc 165  Q
     || |||||||||||    
T  9159698 aattgttcctcttgc 9159712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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