View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_high_32 (Length: 385)

Name: NF11809_high_32
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_high_32
NF11809_high_32
[»] chr2 (4 HSPs)
chr2 (1-123)||(5892036-5892158)
chr2 (195-385)||(5891764-5891962)
chr2 (304-361)||(20539683-20539741)
chr2 (304-361)||(6940247-6940305)
[»] chr6 (4 HSPs)
chr6 (304-360)||(3398611-3398667)
chr6 (304-361)||(7938108-7938166)
chr6 (304-361)||(28152091-28152148)
chr6 (300-361)||(32978908-32978971)
[»] chr5 (2 HSPs)
chr5 (301-357)||(39205869-39205926)
chr5 (295-361)||(7218276-7218343)
[»] chr3 (7 HSPs)
chr3 (285-361)||(27505219-27505296)
chr3 (304-361)||(14216884-14216942)
chr3 (304-361)||(14223013-14223071)
chr3 (311-367)||(35994741-35994797)
chr3 (304-361)||(8383249-8383307)
chr3 (301-357)||(23870572-23870629)
chr3 (304-344)||(14829682-14829722)
[»] chr1 (3 HSPs)
chr1 (301-361)||(14359531-14359591)
chr1 (304-361)||(46348392-46348450)
chr1 (300-367)||(12443463-12443531)
[»] chr8 (1 HSPs)
chr8 (311-361)||(24613520-24613570)
[»] chr4 (3 HSPs)
chr4 (304-355)||(47263978-47264030)
chr4 (301-364)||(50280870-50280936)
chr4 (311-343)||(28720875-28720907)
[»] scaffold0039 (1 HSPs)
scaffold0039 (301-357)||(84986-85043)
[»] scaffold0227 (1 HSPs)
scaffold0227 (302-361)||(7320-7380)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 5892158 - 5892036
Alignment:
Q  1 tgagacacagtacattgggaaccatgcttgaacagccggttccgagaaagatcaacgccgattcggagggaggagttccgtcgtcggtgccgttggatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5892158 tgagacacagtacattgggaaccatgcttgaacagccggttccgagaaagatcaacgccgattcggagggaggagttccgtcgtcggtgccgttggatgt 5892059  T
Q  101 ggccatggcctcgccgtagatcc 123  Q
    ||||||||| |||||||||||||    
T  5892058 ggccatggcgtcgccgtagatcc 5892036  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 195 - 385
Target Start/End: Complemental strand, 5891962 - 5891764
Alignment:
Q  195 attgtacgtagaagattcgaaccccgccaaaatcaaaggttttttcgtgattatgcaccaaacaaatactttacctcctcctaatctgtaaagcacg--- 291  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   | |||||||||||||||||||       
T  5891962 attgtacgtagaagattcgaaccccgccaaaatcaacggttttttcgtgattatgcaccaaacaaatacttta---cttcctaatctgtaaagcacgaac 5891866  T
Q  292 --------gacatggttacggacacgtcgacacagctaataattttaaaaatcatataattatgtgtaattataagtgccgtgttggtatctgacacaac 383  Q
            ||||  ||||  |||||  |||||||| |||||||||||||||| | ||||||||||||||||||||||| ||||| ||| | |||||| ||    
T  5891865 acggacacgacacagttatagacacaccgacacagttaataattttaaaaattacataattatgtgtaattataagtgtcgtgtcggtgtttgacacgac 5891766  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 20539741 - 20539683
Alignment:
Q  304 gacacgtcgacacagctaataattt-taaaaatcatataattatgtgtaattataagtg 361  Q
    |||||||||||||||||||||||||  |||||||||||||||  ||||||||| |||||    
T  20539741 gacacgtcgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtg 20539683  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 6940247 - 6940305
Alignment:
Q  304 gacacgtcgacacagctaataattttaaaaa-tcatataattatgtgtaattataagtg 361  Q
    |||||| |||||||||||||||||||||||| | | ||||||| ||||||||| |||||    
T  6940247 gacacgccgacacagctaataattttaaaaagttacataattaagtgtaattacaagtg 6940305  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 3398611 - 3398667
Alignment:
Q  304 gacacgtcgacacagctaataattttaaaaatcatataattatgtgtaattataagt 360  Q
    |||||| |||||||||||||||||| |||||||||||||||  ||||||||||||||    
T  3398611 gacacgccgacacagctaataatttgaaaaatcatataattcagtgtaattataagt 3398667  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 7938108 - 7938166
Alignment:
Q  304 gacacgtcgacacagctaataattttaaaa-atcatataattatgtgtaattataagtg 361  Q
    |||||| |||||||||||||||||| |||| |||||||||||  |||||||||||||||    
T  7938108 gacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattataagtg 7938166  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 28152091 - 28152148
Alignment:
Q  304 gacacgtcgacacagctaataattttaaaaatcatataattatgtgtaattataagtg 361  Q
    |||||| ||||| |||||||||||| |||||||| ||||||  ||||||||| |||||    
T  28152091 gacacgccgacaaagctaataatttgaaaaatcacataattcagtgtaattacaagtg 28152148  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 32978971 - 32978908
Alignment:
Q  300 tacggacacgtcgacacagctaataattt--taaaaatcatataattatgtgtaattataagtg 361  Q
    |||||||||| ||||||||||||||||||   ||||| || ||||||| ||||||||| |||||    
T  32978971 tacggacacgccgacacagctaataatttgaaaaaaaacacataattaagtgtaattacaagtg 32978908  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 39205869 - 39205926
Alignment:
Q  301 acggacacgtcgacacagctaataatttta-aaaatcatataattatgtgtaattata 357  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||    
T  39205869 acggacacgtcgacactgctaataatttgagaaaatcatataattaggtgtaattata 39205926  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 361
Target Start/End: Complemental strand, 7218343 - 7218276
Alignment:
Q  295 atggttacggacacgtcgacacagctaataattttaa-aaatcatataattatgtgtaattataagtg 361  Q
    |||| |||||||||||||||| |||||||||||| || |||||| ||||||  ||||||||| |||||    
T  7218343 atggatacggacacgtcgacagagctaataatttaaataaatcacataattcagtgtaattacaagtg 7218276  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 27505219 - 27505296
Alignment:
Q  285 aagcacggacatggttacggacacgtcgacacagctaataa-ttttaaaaatcatataattatgtgtaattataagtg 361  Q
    ||||||||| | || |||||||| | ||||||||||||||| |||||||||||| ||||||| ||||||||| |||||    
T  27505219 aagcacggatacggatacggacaagccgacacagctaataatttttaaaaatcacataattaagtgtaattacaagtg 27505296  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 14216884 - 14216942
Alignment:
Q  304 gacacgtcgacacagctaataattttaaaa-atcatataattatgtgtaattataagtg 361  Q
    |||||||||||||| ||||||||||||||| |||||||||||  ||||||||| |||||    
T  14216884 gacacgtcgacacaactaataattttaaaatatcatataattcagtgtaattacaagtg 14216942  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 14223013 - 14223071
Alignment:
Q  304 gacacgtcgacacagctaataattttaaaa-atcatataattatgtgtaattataagtg 361  Q
    |||||||||||||| ||||||||||||||| |||||||||||  ||||||||| |||||    
T  14223013 gacacgtcgacacaactaataattttaaaatatcatataattcagtgtaattacaagtg 14223071  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 35994797 - 35994741
Alignment:
Q  311 cgacacagctaataattttaaaaatcatataattatgtgtaattataagtgccgtgt 367  Q
    |||||||||||||||||| |||||||| ||||||  ||||||||| ||||| |||||    
T  35994797 cgacacagctaataatttgaaaaatcacataattcagtgtaattacaagtgtcgtgt 35994741  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 8383249 - 8383307
Alignment:
Q  304 gacacgtcgacacagctaataatttta-aaaatcatataattatgtgtaattataagtg 361  Q
    |||||| |||||| ||||||||||| | ||||||||||||||  |||||||||||||||    
T  8383249 gacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagtg 8383307  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 23870629 - 23870572
Alignment:
Q  301 acggacacgtcgacacagctaataattt-taaaaatcatataattatgtgtaattata 357  Q
    |||||||||||||||| |||||||||||  |||||||||||||||  |||| ||||||    
T  23870629 acggacacgtcgacaccgctaataatttgaaaaaatcatataattcagtgtgattata 23870572  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 14829682 - 14829722
Alignment:
Q  304 gacacgtcgacacagctaataattttaaaaatcatataatt 344  Q
    |||||| |||||||||||||||||| |||||||| ||||||    
T  14829682 gacacgccgacacagctaataatttgaaaaatcacataatt 14829722  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 14359591 - 14359531
Alignment:
Q  301 acggacacgtcgacacagctaataattttaaaaatcatataattatgtgtaattataagtg 361  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||  ||||||||| |||||    
T  14359591 acggacacgccgacacagctaataatttgaaaaatcacataatttagtgtaattacaagtg 14359531  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 46348450 - 46348392
Alignment:
Q  304 gacacgtcgacacagctaataattt-taaaaatcatataattatgtgtaattataagtg 361  Q
    |||||| ||||||||||||||||||  |||||||||||||||  ||||||||| |||||    
T  46348450 gacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtg 46348392  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 12443531 - 12443463
Alignment:
Q  300 tacggacacgtcgacacagctaataatttta-aaaatcatataattatgtgtaattataagtgccgtgt 367  Q
    |||||||||| |||||||||||||||||| | ||||||| ||||||  |||||||| || ||| |||||    
T  12443531 tacggacacgccgacacagctaataatttgagaaaatcacataattcagtgtaattgtatgtgacgtgt 12443463  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 24613520 - 24613570
Alignment:
Q  311 cgacacagctaataattttaaaaatcatataattatgtgtaattataagtg 361  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||| |||||    
T  24613520 cgacacagctaataatttgaaaaatcacataattaagtgtaattacaagtg 24613570  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 47263978 - 47264030
Alignment:
Q  304 gacacgtcgacacagctaataattt-taaaaatcatataattatgtgtaatta 355  Q
    |||||||||||| |||||||||||| ||||||||| |||||| ||||||||||    
T  47263978 gacacgtcgacatagctaataatttgtaaaaatcacataattctgtgtaatta 47264030  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 50280870 - 50280936
Alignment:
Q  301 acggacacgtcgacacagctaataattttaaaaa-tcatataatta--tgtgtaattataagtgccg 364  Q
    ||||||||| |||||||||||||||||| ||||| ||| |||||||  |||||||||| ||||||||    
T  50280870 acggacacgccgacacagctaataatttgaaaaattcacataattaagtgtgtaattacaagtgccg 50280936  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 28720875 - 28720907
Alignment:
Q  311 cgacacagctaataattttaaaaatcatataat 343  Q
    |||||||||||||||||| ||||||||||||||    
T  28720875 cgacacagctaataatttgaaaaatcatataat 28720907  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 85043 - 84986
Alignment:
Q  301 acggacacgtcgacacagctaataatttta-aaaatcatataattatgtgtaattata 357  Q
    ||||||||| ||||||  ||| |||||| | |||||||||||||||||||||||||||    
T  85043 acggacacgccgacaccactactaatttaagaaaatcatataattatgtgtaattata 84986  T

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Target: scaffold0227 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 361
Target Start/End: Complemental strand, 7380 - 7320
Alignment:
Q  302 cggacacgtcgacacagctaataatttt-aaaaatcatataattatgtgtaattataagtg 361  Q
    |||||||| ||||||| ||||||||||  |||||||| ||||||  |||||||||||||||    
T  7380 cggacacgccgacacaactaataatttggaaaaatcacataatttagtgtaattataagtg 7320  T

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