View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_high_36 (Length: 367)

Name: NF11809_high_36
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_high_36
NF11809_high_36
[»] scaffold1031 (2 HSPs)
scaffold1031 (194-349)||(2377-2532)
scaffold1031 (1-81)||(2644-2724)
[»] chr8 (10 HSPs)
chr8 (194-349)||(216932-217087)
chr8 (194-349)||(693492-693647)
chr8 (194-349)||(697701-697856)
chr8 (194-349)||(730555-730710)
chr8 (194-349)||(854450-854605)
chr8 (1-81)||(216739-216819)
chr8 (1-81)||(693299-693379)
chr8 (1-81)||(697508-697588)
chr8 (1-81)||(730362-730442)
chr8 (1-81)||(854257-854337)
[»] scaffold1037 (2 HSPs)
scaffold1037 (194-349)||(2259-2413)
scaffold1037 (1-81)||(2525-2605)
[»] chr4 (3 HSPs)
chr4 (194-349)||(43737823-43737982)
chr4 (267-349)||(36800196-36800277)
chr4 (1-56)||(43738121-43738176)
[»] chr2 (2 HSPs)
chr2 (276-341)||(2336259-2336324)
chr2 (276-341)||(2343670-2343735)


Alignment Details
Target: scaffold1031 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 194 - 349
Target Start/End: Complemental strand, 2532 - 2377
Alignment:
Q  194 atgatctacatttatgtatttgaaaaatctcaatgnnnnnnncttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 293  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2532 atgatctacatttatgtatttgaaaaatctcaatgtttttttcttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 2433  T
Q  294 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2432 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 2377  T

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Target: scaffold1031; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 2724 - 2644
Alignment:
Q  1 aacaaaataaattcgaatatggaaaaccaccacaacaagcttcactgtatttgaagnnnnnnnncgttgaaaagcaaggaa 81  Q
    ||||||| ||||||| || || |||||||||||||||||||||||| |||||||||        |||||||||||||||||    
T  2724 aacaaaacaaattcggatctgaaaaaccaccacaacaagcttcactttatttgaagaaaaaaaacgttgaaaagcaaggaa 2644  T

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Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 194 - 349
Target Start/End: Original strand, 216932 - 217087
Alignment:
Q  194 atgatctacatttatgtatttgaaaaatctcaatgnnnnnnncttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 293  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  216932 atgatctacatttatgtatttgaaaaatctcaatgtttttttcttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 217031  T
Q  294 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  217032 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 217087  T

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Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 194 - 349
Target Start/End: Original strand, 693492 - 693647
Alignment:
Q  194 atgatctacatttatgtatttgaaaaatctcaatgnnnnnnncttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 293  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  693492 atgatctacatttatgtatttgaaaaatctcaatgtttttttcttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 693591  T
Q  294 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  693592 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 693647  T

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Target: chr8; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 194 - 349
Target Start/End: Original strand, 697701 - 697856
Alignment:
Q  194 atgatctacatttatgtatttgaaaaatctcaatgnnnnnnncttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 293  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697701 atgatctacatttatgtatttgaaaaatctcaatgtttttttcttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 697800  T
Q  294 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697801 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 697856  T

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Target: chr8; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 194 - 349
Target Start/End: Original strand, 730555 - 730710
Alignment:
Q  194 atgatctacatttatgtatttgaaaaatctcaatgnnnnnnncttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 293  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  730555 atgatctacatttatgtatttgaaaaatctcaatgtttttttcttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 730654  T
Q  294 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  730655 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 730710  T

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Target: chr8; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 194 - 349
Target Start/End: Original strand, 854450 - 854605
Alignment:
Q  194 atgatctacatttatgtatttgaaaaatctcaatgnnnnnnncttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 293  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  854450 atgatctacatttatgtatttgaaaaatctcaatgtttttttcttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 854549  T
Q  294 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  854550 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 854605  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 216739 - 216819
Alignment:
Q  1 aacaaaataaattcgaatatggaaaaccaccacaacaagcttcactgtatttgaagnnnnnnnncgttgaaaagcaaggaa 81  Q
    ||||||| ||||| | || ||||||||||||||||||||||||||| |||||||||        |||||||||||||||||    
T  216739 aacaaaacaaatttggatctggaaaaccaccacaacaagcttcactatatttgaagaaaaaaaacgttgaaaagcaaggaa 216819  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 693299 - 693379
Alignment:
Q  1 aacaaaataaattcgaatatggaaaaccaccacaacaagcttcactgtatttgaagnnnnnnnncgttgaaaagcaaggaa 81  Q
    ||||||| ||||| | || ||||||||||||||||||||||||||| |||||||||        |||||||||||||||||    
T  693299 aacaaaacaaatttggatctggaaaaccaccacaacaagcttcactatatttgaagaaaaaaaacgttgaaaagcaaggaa 693379  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 697508 - 697588
Alignment:
Q  1 aacaaaataaattcgaatatggaaaaccaccacaacaagcttcactgtatttgaagnnnnnnnncgttgaaaagcaaggaa 81  Q
    ||||||| ||||| | || ||||||||||||||||||||||||||| |||||||||        |||||||||||||||||    
T  697508 aacaaaacaaatttggatctggaaaaccaccacaacaagcttcactatatttgaagaaaaaaaacgttgaaaagcaaggaa 697588  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 730362 - 730442
Alignment:
Q  1 aacaaaataaattcgaatatggaaaaccaccacaacaagcttcactgtatttgaagnnnnnnnncgttgaaaagcaaggaa 81  Q
    ||||||| ||||| | || ||||||||||||||||||||||||||| |||||||||        |||||||||||||||||    
T  730362 aacaaaacaaatttggatctggaaaaccaccacaacaagcttcactatatttgaagaaaaaaaacgttgaaaagcaaggaa 730442  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 854257 - 854337
Alignment:
Q  1 aacaaaataaattcgaatatggaaaaccaccacaacaagcttcactgtatttgaagnnnnnnnncgttgaaaagcaaggaa 81  Q
    ||||||| ||||| | || ||||||||||||||||||||||||||| |||||||||        |||||||||||||||||    
T  854257 aacaaaacaaatttggatctggaaaaccaccacaacaagcttcactatatttgaagaaaaaaaacgttgaaaagcaaggaa 854337  T

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Target: scaffold1037 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 194 - 349
Target Start/End: Complemental strand, 2413 - 2259
Alignment:
Q  194 atgatctacatttatgtatttgaaaaatctcaatgnnnnnnncttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaacatg 293  Q
    ||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2413 atgatctacatttatgtatttgaaaaatctcaat-attttttcttcttttgttattatgtcgtgtaggttgcttggctatatttttctgtgattaacatg 2315  T
Q  294 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2314 ttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 2259  T

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Target: scaffold1037; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 2605 - 2525
Alignment:
Q  1 aacaaaataaattcgaatatggaaaaccaccacaacaagcttcactgtatttgaagnnnnnnnncgttgaaaagcaaggaa 81  Q
    ||||||| ||||||| || || |||||||||||||||||||||||| |||||||||        |||||||||||||||||    
T  2605 aacaaaacaaattcggatctgaaaaaccaccacaacaagcttcactttatttgaagaaaaaaaacgttgaaaagcaaggaa 2525  T

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Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 194 - 349
Target Start/End: Complemental strand, 43737982 - 43737823
Alignment:
Q  194 atgatctacatttatgtatttgaaaaatctcaatgnnnnnnnc---ttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaac 290  Q
    |||||| ||||||||||||||||||||||||||||           || |||||||||||||||||||||||||||||||||||||||||||||| |||     
T  43737982 atgatcgacatttatgtatttgaaaaatctcaatgttttatttattttattttgttattatgtcgtgtaggttgcttggctatatttttgtgtgactaat 43737883  T
Q  291 atgttgaactatttgtaccgaggagc-aataactagcaataatgttaatggacatcgtgg 349  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||    
T  43737882 atgttgaactatttgtaccgaggagcaaacaactagcaataatgttaatgaacatcgtgg 43737823  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 36800277 - 36800196
Alignment:
Q  267 tggctatatttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatggacatcgtgg 349  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||||||||    
T  36800277 tggctatatttt-gtgtgattaacatgttgaactatttggaccgaggagcaatagctagcaatggtgttaatggacatcgtgg 36800196  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43738176 - 43738121
Alignment:
Q  1 aacaaaataaattcgaatatggaaaaccaccacaacaagcttcactgtatttgaag 56  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  43738176 aacaaaataaattcgtatctggaaaaccaccacaacaagcttcactgtatttgaag 43738121  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 341
Target Start/End: Original strand, 2336259 - 2336324
Alignment:
Q  276 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 341  Q
    ||||||||||||||  |||| ||||||||| | | |||||||||| ||||||||  ||||||||||    
T  2336259 ttttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatgga 2336324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 341
Target Start/End: Original strand, 2343670 - 2343735
Alignment:
Q  276 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 341  Q
    ||||||||||||||  |||| |||||| || | |||||||||||| ||||||||  ||||||||||    
T  2343670 ttttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatgga 2343735  T

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