View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_high_37 (Length: 365)

Name: NF11809_high_37
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_high_37
NF11809_high_37
[»] chr7 (23 HSPs)
chr7 (19-359)||(29577704-29578044)
chr7 (23-353)||(29581879-29582209)
chr7 (71-353)||(8537884-8538166)
chr7 (71-353)||(8545481-8545763)
chr7 (71-353)||(8570159-8570441)
chr7 (65-353)||(8609759-8610047)
chr7 (71-353)||(8576174-8576456)
chr7 (60-353)||(8382914-8383207)
chr7 (62-175)||(8559167-8559280)
chr7 (71-353)||(8581548-8581830)
chr7 (190-335)||(8659330-8659475)
chr7 (150-347)||(7877777-7877974)
chr7 (61-338)||(8590476-8590753)
chr7 (199-335)||(8667395-8667531)
chr7 (199-359)||(10494406-10494566)
chr7 (190-359)||(1301427-1301596)
chr7 (217-353)||(27830913-27831049)
chr7 (262-353)||(8559372-8559463)
chr7 (199-350)||(8654426-8654577)
chr7 (203-335)||(13333512-13333644)
chr7 (187-337)||(8585760-8585910)
chr7 (81-170)||(8601832-8601921)
chr7 (190-335)||(8646844-8646989)
[»] chr8 (2 HSPs)
chr8 (65-353)||(12528346-12528634)
chr8 (217-335)||(43744810-43744928)
[»] chr2 (8 HSPs)
chr2 (199-353)||(7542202-7542356)
chr2 (199-353)||(14703384-14703538)
chr2 (199-353)||(12245444-12245598)
chr2 (190-335)||(16657573-16657718)
chr2 (196-303)||(17718039-17718146)
chr2 (256-335)||(16662048-16662127)
chr2 (287-350)||(43625476-43625539)
chr2 (199-335)||(12234665-12234801)
[»] chr1 (3 HSPs)
chr1 (190-359)||(4678590-4678759)
chr1 (190-353)||(34466831-34466994)
chr1 (194-335)||(15595005-15595146)
[»] chr4 (2 HSPs)
chr4 (199-332)||(9335950-9336083)
chr4 (249-353)||(35132474-35132578)
[»] chr6 (2 HSPs)
chr6 (277-335)||(11156324-11156382)
chr6 (277-350)||(11133048-11133121)


Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 29578044 - 29577704
Alignment:
Q  19 accatactctggtccatgtaagcatcacgtagacaactccgaacaatctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578044 accatactctggtccatgtaagcatcacgtagacaactccgaacaatctccatacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgag 29577945  T
Q  119 taattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29577944 taattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgtggcctcaatgtcatatgaaagtgccctctttgccctctcacaagcagt 29577845  T
Q  219 tctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29577844 tctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggctcaccattttattatcgaagtcc 29577745  T
Q  319 tctcctcctaggtgagtatcaccagcagtggcctttgcttc 359  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  29577744 tctcctcctaggtgagtatcaccagcagtggcctttacttc 29577704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 353
Target Start/End: Complemental strand, 29582209 - 29581879
Alignment:
Q  23 tactctggtccatgtaagcatcacgtagacaactccgaacaatctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaat 122  Q
    |||||| | |||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| | ||||||| || ||||||||||     
T  29582209 tactcttgaccatgttagcatcacgtagacaactcccaacaatctccatacatttttcaaagaggtcgatgttgatttgctcaaacttggcccgagtaac 29582110  T
Q  123 tgatgagcagaagtcaataccctgacatatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctc 222  Q
    || ||||||||| |||||||| ||||| || ||||||| ||||||||||| |||||||||| | ||||||| ||||||||||||||||||||| ||||||    
T  29582109 tggtgagcagaaatcaataccttgacaaatggcatctacgtcaattgtggtctcaatgtcaaatgaaagtgtcctctttgccctctcacaagctgttctc 29582010  T
Q  223 agcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctc 322  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||   ||||| ||||||||||    
T  29582009 agcttccttaaagcttttgggttcccactaatgtccaaattgttcttcctcttcaactcattcgcaaagtaattcaccattcggttatcaaagtcctctc 29581910  T
Q  323 ctcctaggtgagtatcaccagcagtggcctt 353  Q
    |||||||||||||||| ||||||||||||||    
T  29581909 ctcctaggtgagtatcgccagcagtggcctt 29581879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 71 - 353
Target Start/End: Original strand, 8537884 - 8538166
Alignment:
Q  71 tacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgt 170  Q
    |||| |||||||||||||||||||||||| ||||||| || |||||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||||    
T  8537884 tacacttttcaaagaggtccatgttgagttgctcaaacttggcccgagtgattgatgaacagaaatcaacaccctgacatatagcatctatatcaattgt 8537983  T
Q  171 ggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttc 270  Q
    ||| ||| |||| || ||||| | ||| ||||||||||| || |||||||||| |||||| | ||||||||  ||   ||||||||| || ||||| |||    
T  8537984 ggcttcagtgtcgtaagaaagcgacctttttgccctctcgcatgcagttctcaacttcctcagagcttttgaatttccactaatgtcaactttgtttttc 8538083  T
Q  271 ctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
    |||||||| ||||||||||| || |||||||    |||||| |||||||||||||| ||||||||||| || |||||||||||    
T  8538084 ctcttcaattcattcacaaaatgattcaccaaccgattatcaaagtcctctcctccaaggtgagtatctccggcagtggcctt 8538166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 71 - 353
Target Start/End: Original strand, 8545481 - 8545763
Alignment:
Q  71 tacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgt 170  Q
    |||| ||||||||||||||||| || | | ||||||| || |||||||| ||  |||| || ||||||||||| ||| ||| |||||||| |||||||||    
T  8545481 tacacttttcaaagaggtccatattcaattgctcaaacttggcccgagtgatgcatgaacaaaagtcaataccttgatataaagcatctaggtcaattgt 8545580  T
Q  171 ggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttc 270  Q
    ||||||| |||| || ||||||| ||| |||||| ||||||| |||||||||| | |||| || |||| |||||||  |||||| ||| |||||||||||    
T  8545581 ggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggcagttctcaacctcctcaaggcttctgggttccgactaatatcctcattgttcttc 8545680  T
Q  271 ctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
    ||||| ||||| ||||||||||  ||||||||| | ||||| ||||| || || ||||||| ||| || ||||||||||||||    
T  8545681 ctcttgaactccttcacaaagtaattcaccattctgttatcaaagtcttcaccgcctaggtaagtgtctccagcagtggcctt 8545763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 71 - 353
Target Start/End: Original strand, 8570159 - 8570441
Alignment:
Q  71 tacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgt 170  Q
    |||| ||||||||||||| ||| || | |  |||||| || ||||| || |||||||| | ||||||||| |||| | ||||||||||||  ||||||||    
T  8570159 tacacttttcaaagaggttcatattcatttcctcaaacttggcccgggttattgatgaactgaagtcaattcccttatatatagcatctagctcaattgt 8570258  T
Q  171 ggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttc 270  Q
    ||||||| | ||||| ||||||| ||| ||||||||||||||||| ||||| | | |||| || ||||||||||||  |||||| ||| | |||||||||    
T  8570259 ggcctcagtatcatatgaaagtgtcctttttgccctctcacaagctgttcttaacctcctcaaggcttttgggttcctactaatatcctcgttgttcttc 8570358  T
Q  271 ctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
     |||| ||||  |||||||||||  ||| |||| | ||||| || || || ||||| |||||||| || ||||||||||||||    
T  8570359 ttcttgaacttcttcacaaagtgagtcaacattctgttatcaaaatcttcacctcccaggtgagtgtctccagcagtggcctt 8570441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 65 - 353
Target Start/End: Original strand, 8609759 - 8610047
Alignment:
Q  65 tctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtc 164  Q
    ||||| |||| |||||||||||||||||||| ||| ||||||| ||||| ||||| |||||||| || || |||||||||| | |||||||||| || ||    
T  8609759 tctccatacacttttcaaagaggtccatgttaagttgctcaaacttcgcacgagtgattgatgaacaaaaatcaataccctcagatatagcatcaatatc 8609858  T
Q  165 aattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattg 264  Q
    ||||||||||||  ||||| | ||||||| |||||||||||||||||||||||| |||| | |||| | |||  | | ||||  ||| || ||           
T  8609859 aattgtggcctccgtgtcaaatgaaagtgtcctctttgccctctcacaagcagtcctcaacctcctaagagccctcgagttcccactgatatcttttgaa 8609958  T
Q  265 ttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
    | |||||| || ||||| ||||||||||| || |||||| | | ||| |||||||||||||| ||||||||||| |||||||| |||||    
T  8609959 tgcttccttttgaactccttcacaaagtgattaaccattctgtgatcaaagtcctctcctccaaggtgagtatctccagcagtagcctt 8610047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 71 - 353
Target Start/End: Original strand, 8576174 - 8576456
Alignment:
Q  71 tacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgt 170  Q
    |||| ||||||||||||| ||| || | |  |||||| || ||||| || ||||| || |||||||||||||| | | ||||||||||||  ||||||||    
T  8576174 tacacttttcaaagaggttcatattcatttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgt 8576273  T
Q  171 ggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttc 270  Q
    ||| ||| ||||||| ||||||| ||| |||||| | |||||||||||||||| | ||||||| |||||||  |||  |||||| ||| | |||| |||     
T  8576274 ggcatcagtgtcatatgaaagtgtcctttttgccttttcacaagcagttctcaacctccttaaggcttttgaattctcactaatatcctctttgtacttg 8576373  T
Q  271 ctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
     || | ||||| || |||||||| | ||||||| | ||||| ||||| |  |||||||||||||| || || |||||||||||    
T  8576374 ttcctgaactccttaacaaagtgatccaccattatgttatcaaagtcttggcctcctaggtgagtgtctccggcagtggcctt 8576456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 60 - 353
Target Start/End: Complemental strand, 8383207 - 8382914
Alignment:
Q  60 aacaatctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatct 159  Q
    |||| ||||| |||| |||||||| |||||||| |||||| |||||||||| |||||||| | ||| ||    || |||||||||| | | | |||||||    
T  8383207 aacagtctccatacacttttcaaataggtccatattgagttgctcaaatttggcccgagtgactgaagaattaaaatcaataccctcatacagagcatct 8383108  T
Q  160 atgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtcca 259  Q
    |||||||| | ||||||||| ||| | ||||||| ||| ||||||||||| ||||| ||||| | | | || | ||| |||||||||  ||||||||||     
T  8383107 atgtcaatcgcggcctcaatatcaaatgaaagtgtcctttttgccctctcgcaagccgttcttaaccttctaagagcctttgggttcccactaatgtcct 8383008  T
Q  260 cattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
     ||| | ||||||||| ||||| |  |||||||  ||||| ||| | ||||| ||||| || |||||||| ||||| || || |||||||||||    
T  8383007 tattatgcttcctcttgaactcgtcaacaaagtacttcacgattctgttatctaagtcttcacctcctagatgagtgtctccggcagtggcctt 8382914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 8559167 - 8559280
Alignment:
Q  62 caatctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctat 161  Q
    |||||||| |||| ||||||||||| ||||| || ||| ||||||| || ||||| || |||||||| || |||||||| ||||||||||||||||||||    
T  8559167 caatctccatacacttttcaaagagatccatattcagttgctcaaacttagcccgtgtgattgatgaacacaagtcaatgccctgacatatagcatctat 8559266  T
Q  162 gtcaattgtggcct 175  Q
    ||||||||||||||    
T  8559267 gtcaattgtggcct 8559280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 71 - 353
Target Start/End: Original strand, 8581548 - 8581830
Alignment:
Q  71 tacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgt 170  Q
    |||| ||||||||||||| ||| || | | ||||||| || |||||||| ||||| ||  ||||||||||||| |||  ||||| ||||| |||||||||    
T  8581548 tacacttttcaaagaggttcatattcatttgctcaaacttggcccgagttattgacgaatagaagtcaataccttgatgtatagaatctaggtcaattgt 8581647  T
Q  171 ggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttc 270  Q
    ||||||| ||||||| ||||||| ||| || || |||||||||||||| |||| | | || |  |||||||| ||   | |||| ||| | || |  ||     
T  8581648 ggcctcagtgtcatatgaaagtgtccttttcgctctctcacaagcagtcctcaaccttctaatggcttttggatttccaataatctcctctttatgtttt 8581747  T
Q  271 ctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
    ||||| |||||   ||||||||| ||||||||| | ||||| || || || ||||| |||||||| || ||||||||||||||    
T  8581748 ctcttgaactccgacacaaagtgattcaccattctgttatcaaaatcttcccctcccaggtgagtgtctccagcagtggcctt 8581830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 190 - 335
Target Start/End: Original strand, 8659330 - 8659475
Alignment:
Q  190 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaa 289  Q
    |||| |||||||||||||||||| |||||||||| | ||||||| | |||||||||   |||||||||||| || |||||| | || ||||| |  ||||    
T  8659330 agtgtcctctttgccctctcacaggcagttctcaacctccttaaggattttgggttaccactaatgtccactttattcttctttttgaactcctctacaa 8659429  T
Q  290 agtggttcaccattttattatcgaagtcctctcctcctaggtgagt 335  Q
    ||| |||||||||| |  |||| |||||||||||||| ||||||||    
T  8659430 agtagttcaccattctgctatcaaagtcctctcctccaaggtgagt 8659475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 347
Target Start/End: Complemental strand, 7877974 - 7877777
Alignment:
Q  150 tatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaa 249  Q
    ||||||||||||||||||||| | |||| | ||| | || |||| ||| || ||||||||||| |||||||||| | |||| |  ||  | |||||   |    
T  7877974 tatagcatctatgtcaattgtagtctcagtatcaaatgacagtgtccttttagccctctcacatgcagttctcaacctcctaagggccctcgggtttcca 7877875  T
Q  250 ctaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagt 347  Q
    | ||||||||| || ||||||||||| |||||  |||| || ||||||| |||| | ||||| ||||||||||| |||||||||||||| || |||||    
T  7877874 ccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagt 7877777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 338
Target Start/End: Original strand, 8590476 - 8590753
Alignment:
Q  61 acaatctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatcta 160  Q
    |||||||||  ||| ||||||||||| ||| |||| ||| | ||||| || |||||||| | | || |   ||||||||  |||| | ||||||||||||    
T  8590476 acaatctccaaacacttttcaaagagatccctgttaagttgttcaaacttggcccgagtgactaataaatggaagtcaactccctcatatatagcatcta 8590575  T
Q  161 tgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccac 260  Q
    || | ||||| |||||| | ||||| || |||| ||| || |||||||||||||| ||| ||| | |||| | |||  ||| ||||  ||| |  |||||    
T  8590576 tgccgattgttgcctcagtatcatatgacagtgtccttttagccctctcacaagctgttttcaacctcctaagagcccttgcgttcccacttaaatccac 8590675  T
Q  261 attgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatc 338  Q
     || ||||||||| | ||||| ||||| || ||||  |||||| | ||||| |||||||||||||||||||| |||||    
T  8590676 tttattcttcctcctaaactccttcaccaaatggtgaaccattctgttatcaaagtcctctcctcctaggtgggtatc 8590753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 335
Target Start/End: Original strand, 8667395 - 8667531
Alignment:
Q  199 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 298  Q
    |||||||||||||| |||||||||| | ||||||| | ||||||||||  ||| |||||||| || |||||| | || ||||| |  ||||| | |||||    
T  8667395 tttgccctctcacaggcagttctcaacctccttaaggattttgggttctgactgatgtccactttattcttcttttttaactcctcaacaaaatagttca 8667494  T
Q  299 ccattttattatcgaagtcctctcctcctaggtgagt 335  Q
    ||||| | |||||||||||||| || || ||||||||    
T  8667495 ccattctgttatcgaagtcctcgcccccaaggtgagt 8667531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 359
Target Start/End: Complemental strand, 10494566 - 10494406
Alignment:
Q  199 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 298  Q
    |||||||||||||| |||||||||| | ||||||| | |||||| |||  ||| |||||||| || |||||| | || ||||| |  ||||| |  ||||    
T  10494566 tttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaataattca 10494467  T
Q  299 ccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctttgcttc 359  Q
    ||||| | ||||||||||||||||| || |||||||| | ||| |||||||| ||| ||||    
T  10494466 ccattctgttatcgaagtcctctcccccaaggtgagtgttacctgcagtggcttttacttc 10494406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 359
Target Start/End: Original strand, 1301427 - 1301596
Alignment:
Q  190 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaa 289  Q
    |||| ||| |||||||||||||| ||| |||||| | ||||||| | |||  ||||   |||||||||||| || |||||| |  | ||||| |  ||||    
T  1301427 agtgtcctttttgccctctcacacgcaattctcaacctccttaaggatttctggttaccactaatgtccactttattcttctttctgaactcctctacaa 1301526  T
Q  290 agtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctttgcttc 359  Q
    ||| | |||||||| ||||||| |||||||||||||| ||||||||||  ||| ||||||| ||| ||||    
T  1301527 agtagctcaccattctattatcaaagtcctctcctccaaggtgagtatttccaccagtggcttttacttc 1301596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 353
Target Start/End: Complemental strand, 27831049 - 27830913
Alignment:
Q  217 gttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagt 316  Q
    ||||||||| |||| || ||| ||||||||  ||||||||||||  | |||||| |||| ||| | | |||||| | |||||||||  ||||||| ||||    
T  27831049 gttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaaatagttcaccatcctattatcaaagt 27830950  T
Q  317 cctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
    ||||||| || |||||||| |  |||||||| |||||    
T  27830949 cctctccaccaaggtgagtgtttccagcagttgcctt 27830913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 8559372 - 8559463
Alignment:
Q  262 ttgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
    |||||||||||||  ||||| || |||||||| ||||||||| | ||||| |||||||||||||| ||||| || || || | |||||||||    
T  8559372 ttgttcttcctctcaaactcttttacaaagtgtttcaccattctgttatcaaagtcctctcctccgaggtgtgtgtctccggaagtggcctt 8559463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 8654426 - 8654577
Alignment:
Q  199 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 298  Q
    |||||||||||||| |||||||||| | ||||||| | |||||||||    ||||| ||||| || |||||| | || ||||| |  ||||||| || ||    
T  8654426 tttgccctctcacaggcagttctcaacctccttaaggattttgggttaccgctaatttccactttattcttctttttgaactcctctacaaagtagtaca 8654525  T
Q  299 ccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggc 350  Q
    ||||| | ||||| ||||| ||||| |||||||| || |  |||||||||||    
T  8654526 ccattctgttatcaaagtcttctccccctaggtgcgtgtttccagcagtggc 8654577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 335
Target Start/End: Complemental strand, 13333644 - 13333512
Alignment:
Q  203 ccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccat 302  Q
    |||||||||| |||||||||| | ||||||| | ||||||||||  ||| || || || || |||||| | || ||||| |  ||||| | |||||||||    
T  13333644 ccctctcacaggcagttctcaacctccttaaggattttgggttcccactgatatcgacgttattcttctttttgaactcctcaacaaaatagttcaccat 13333545  T
Q  303 tttattatcgaagtcctctcctcctaggtgagt 335  Q
    | | ||||||||||| ||||| || ||||||||    
T  13333544 tctgttatcgaagtcttctcccccaaggtgagt 13333512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 337
Target Start/End: Complemental strand, 8585910 - 8585760
Alignment:
Q  187 gaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattca 286  Q
    ||||||| ||| |||||| | ||||| || ||||| | |  ||| |||||| ||||||||  | |||| |||||||||||||| ||||| || || |  |    
T  8585910 gaaagtgtcctttttgccttttcacatgccgttcttaaccgcctcaaagctcttgggttcttagtaatatccacattgttctttctcttaaattcctcaa 8585811  T
Q  287 caaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtat 337  Q
    |||||| ||||| |||| | ||||| |||||| |||| || ||||||||||    
T  8585810 caaagtagttcaacattctgttatcaaagtcccctcccccaaggtgagtat 8585760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 8601832 - 8601921
Alignment:
Q  81 aaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgt 170  Q
    |||||||||||  |||||| ||||||| || |||||||| ||||||||   ||| |||||||||| | |||  | |||||||||||||||    
T  8601832 aaagaggtccacattgagttgctcaaacttggcccgagtgattgatgaatggaaatcaataccctcaaataaggaatctatgtcaattgt 8601921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 335
Target Start/End: Original strand, 8646844 - 8646989
Alignment:
Q  190 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaa 289  Q
    |||| ||| ||||| ||||| || || ||||||| | ||||||| ||| ||| |||   | |||||||||| ||||||||| | || || || |   |||    
T  8646844 agtgtcctttttgctctctcgcatgccgttctcaacctccttaaggctcttgagtttccagtaatgtccaccttgttcttcttgttaaattcttgtgcaa 8646943  T
Q  290 agtggttcaccattttattatcgaagtcctctcctcctaggtgagt 335  Q
    |||||| ||||||| || |||| |||||||||||||| ||||||||    
T  8646944 agtggtccaccattctactatcaaagtcctctcctccgaggtgagt 8646989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 65 - 353
Target Start/End: Original strand, 12528346 - 12528634
Alignment:
Q  65 tctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtc 164  Q
    ||||| |||| ||||||||||||||||| || ||| |||| || || || ||||| |||||||||||||||||||| |||| ||||||||||||||||||    
T  12528346 tctccatacacttttcaaagaggtccatattcagttgctcgaacttggctcgagtgattgatgagcagaagtcaatgccctcacatatagcatctatgtc 12528445  T
Q  165 aattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattg 264  Q
    |||||| |||||  | || || ||||||| ||| || ||| |||| ||   ||||||||   ||||||  ||||||| ||||  | ||||||| || |||    
T  12528446 aattgtagcctctgtatcgtatgaaagtgtccttttcgccttctcgcagttagttctcaatctccttagggcttttgagttcccaataatgtcaactttg 12528545  T
Q  265 ttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
    ||||||||||| ||||| ||||||||||| |||||||||  |||||| |||||||||||||| |||||||| || || |||||||||||    
T  12528546 ttcttcctcttaaactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctccggcagtggcctt 12528634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 335
Target Start/End: Original strand, 43744810 - 43744928
Alignment:
Q  217 gttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagt 316  Q
    ||||||| | ||||||| ||| |||||||   | |||||||||| ||||||||| |||| ||||| |   | |||| |||||||||  ||||||| || |    
T  43744810 gttctcaacctccttaatgctcttgggtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagttcaccatcctattatcaaaat 43744909  T
Q  317 cctctcctcctaggtgagt 335  Q
    |||||||||| ||||||||    
T  43744910 cctctcctccgaggtgagt 43744928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 353
Target Start/End: Original strand, 7542202 - 7542356
Alignment:
Q  199 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 298  Q
    ||||||||||||||||||||||||| | |||| || |||||||| |||  |||||||||||| |||||||| ||||| ||||| |  ||||||| ||||     
T  7542202 tttgccctctcacaagcagttctcaacctcctcaaggcttttggattcccactaatgtccactttgttctttctcttgaactcttgtacaaagtagttcg 7542301  T
Q  299 ccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
    ||||| ||||||| ||||| ||||| || |||||||| |  ||||||||||||||    
T  7542302 ccattctattatcaaagtcttctccaccaaggtgagtgttgccagcagtggcctt 7542356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 353
Target Start/End: Original strand, 14703384 - 14703538
Alignment:
Q  199 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 298  Q
    ||||||||||| ||||| |||||||   ||||||| |||||||| ||   |||||||||||   |||| || ||||| ||||| |  ||||||| |||||    
T  14703384 tttgccctctcgcaagcggttctcaagctccttaaggcttttggatttccactaatgtccaatctgttttttctcttgaactcttgaacaaagtagttca 14703483  T
Q  299 ccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
    ||||| | ||||||||||||||||| || |||||||| |  |||||||| |||||    
T  14703484 ccattctgttatcgaagtcctctcccccgaggtgagtgtttccagcagtagcctt 14703538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 353
Target Start/End: Complemental strand, 12245598 - 12245444
Alignment:
Q  199 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 298  Q
    |||||||||||||||||||||||||   |||| || |||||||   |   |||||| ||||  |||||||| ||||| ||||| |   |||||| ||| |    
T  12245598 tttgccctctcacaagcagttctcaatctcctcaaggcttttgaacttgcactaatatccaatttgttctttctcttgaactcctgtgcaaagtagttta 12245499  T
Q  299 ccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
    ||||| ||||||| || ||||||||||| |||||||| |  ||||||||||||||    
T  12245498 ccattctattatcaaaatcctctcctccaaggtgagtgtttccagcagtggcctt 12245444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 335
Target Start/End: Complemental strand, 16657718 - 16657573
Alignment:
Q  190 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaa 289  Q
    |||| |||||||||||||||||| |||||||||| | |||| || ||| ||| ||||  ||| |||||||| || |||||| | |  ||||| |  ||||    
T  16657718 agtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttgagttcccacttatgtccaccttattcttcttttgaaactcctctacaa 16657619  T
Q  290 agtggttcaccattttattatcgaagtcctctcctcctaggtgagt 335  Q
    ||| ||||||| || | ||||| ||||||||||| || ||||||||    
T  16657618 agtagttcaccgttctgttatcaaagtcctctcccccaaggtgagt 16657573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 303
Target Start/End: Complemental strand, 17718146 - 17718039
Alignment:
Q  196 ctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggt 295  Q
    ||||| ||||||||||||||||| |||| |||| | | |||| |||||||   ||||||||||   |||||||| ||||| ||||| |  ||||||||||    
T  17718146 ctcttcgccctctcacaagcagtcctcaacttcataagagctcttgggttgccactaatgtccttcttgttctttctcttgaactcttgaacaaagtggt 17718047  T
Q  296 tcaccatt 303  Q
    ||||||||    
T  17718046 tcaccatt 17718039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 16662127 - 16662048
Alignment:
Q  256 tccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagt 335  Q
    ||||| ||||||||||| || || || |||||||||| ||||| |||| | ||||| ||||||||||| || ||||||||    
T  16662127 tccactttgttcttcctattaaattctttcacaaagtagttcaacattctgttatcaaagtcctctcccccgaggtgagt 16662048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 43625476 - 43625539
Alignment:
Q  287 caaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggc 350  Q
    |||||| |||||||||| ||| ||| |||||||||||||| |||||||| |  |||||||||||    
T  43625476 caaagtagttcaccattctatcatcaaagtcctctcctccaaggtgagtgtttccagcagtggc 43625539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 335
Target Start/End: Original strand, 12234665 - 12234801
Alignment:
Q  199 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 298  Q
    ||||||||||||||||||||||| | | |||| || |||||||| ||   ||| |||||||| || ||||| || || ||||| |   ||| || ||| |    
T  12234665 tttgccctctcacaagcagttcttaacctcctcaaggcttttggatttccactcatgtccacttttttctttctattgaactcttgagcaaggtagttta 12234764  T
Q  299 ccattttattatcgaagtcctctcctcctaggtgagt 335  Q
    ||||| | ||||| ||||||||||| || ||||||||    
T  12234765 ccattctgttatcaaagtcctctcccccgaggtgagt 12234801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 190 - 359
Target Start/End: Complemental strand, 4678759 - 4678590
Alignment:
Q  190 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaa 289  Q
    |||| ||||||||||||||| || |||||||||| | ||||||| | ||||| ||||  ||||||||||||||| |||||| | || ||||| |  ||||    
T  4678759 agtgtcctctttgccctctcgcaggcagttctcaacctccttaagggttttgcgttcttactaatgtccacattattcttctttttgaactcctctacaa 4678660  T
Q  290 agtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctttgcttc 359  Q
    ||| |||||||||| | ||||| ||||||||||| ||||||||||| |  ||||||||||| ||| ||||    
T  4678659 agtagttcaccattctgttatcaaagtcctctccacctaggtgagtgtttccagcagtggcttttacttc 4678590  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 353
Target Start/End: Complemental strand, 34466994 - 34466831
Alignment:
Q  190 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaa 289  Q
    |||| |||||||||  |||| || |||||||||| | |||| |||||| | |||||   |||||| |||  ||| | ||||||||| ||||| ||  |||    
T  34466994 agtgtcctctttgcattctcgcacgcagttctcaacctcctcaaagctctagggtttccactaatatccttattatgcttcctcttgaactcctttgcaa 34466895  T
Q  290 agtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 353  Q
    |||||||| ||||| ||||||| |||||||||| ||| |||||||| | ||||| |||||||||    
T  34466894 agtggttcgccattctattatcaaagtcctctcgtccgaggtgagtgttaccagaagtggcctt 34466831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 335
Target Start/End: Original strand, 15595005 - 15595146
Alignment:
Q  194 ccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtg 293  Q
    |||| |||||||| || || ||||||||||   |||| || ||  ||||||||  | |||| ||||| ||||||||| |||| || || | | ||||||     
T  15595005 ccctttttgccctttcgcacgcagttctcaatctcctcaaggcccttgggttcccagtaatatccactttgttcttcgtcttgaattcctgcgcaaagta 15595104  T
Q  294 gttcaccattttattatcgaagtcctctcctcctaggtgagt 335  Q
    ||| |||||| | ||||| |||||||||||||| ||||||||    
T  15595105 gttgaccattctgttatcaaagtcctctcctccaaggtgagt 15595146  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 332
Target Start/End: Complemental strand, 9336083 - 9335950
Alignment:
Q  199 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 298  Q
    |||||||||||||| |||||||||| | ||||||| | ||||||||||    | |||||||| || |||||| | || ||||| | |||||| | ||| |    
T  9336083 tttgccctctcacaggcagttctcaacctccttaaggattttgggttctgcttgatgtccactttattcttcttttttaactcttccacaaaatagttaa 9335984  T
Q  299 ccattttattatcgaagtcctctcctcctaggtg 332  Q
    ||||| | ||||| |||||||| ||||| |||||    
T  9335983 ccattctgttatcaaagtcctcgcctccaaggtg 9335950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 353
Target Start/End: Original strand, 35132474 - 35132578
Alignment:
Q  249 actaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtg 348  Q
    ||||||||| || |||||||| ||||| ||||| |  ||||||| |||||||||| | ||||| ||||||||||| || || ||||| |  || ||||||    
T  35132474 actaatgtctactttgttctttctcttgaactcttgtacaaagtagttcaccattctgttatcaaagtcctctccaccgagatgagtgtttccggcagtg 35132573  T
Q  349 gcctt 353  Q
    |||||    
T  35132574 gcctt 35132578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 11156324 - 11156382
Alignment:
Q  277 aactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagt 335  Q
    |||||||||||||| |||||||||||| ||||||| ||||| | ||| || ||||||||    
T  11156324 aactcattcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagt 11156382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 11133048 - 11133121
Alignment:
Q  277 aactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggc 350  Q
    ||||| ||||| || |||||||||||| | ||||| ||||| | ||| || ||||||||||| |||||||||||    
T  11133048 aactctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggc 11133121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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