View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_high_4 (Length: 695)

Name: NF11809_high_4
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_high_4
NF11809_high_4
[»] chr3 (1 HSPs)
chr3 (1-678)||(45415972-45416649)


Alignment Details
Target: chr3 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 678
Target Start/End: Complemental strand, 45416649 - 45415972
Alignment:
Q  1 gaggtaccagaagacctgtttctgtcctgagcaaagacaagagcaacagcttctatgcaccctttactaccacaggcgtgtctagaatcatttccacatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45416649 gaggtaccagaagacctgtttctgtcctgagcaaagacaagagcaacagcttctatgcaccctttactaccacaggcgtgtctagaatcatttccacatc 45416550  T
Q  101 tgaatacagagcatcctctttcatcgcccacaacgactgtgtccataggcatggcataatctgaaacaaaacaaaatacagtcaaataagacagaaagta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  45416549 tgaatacagagcatcctctttcatcgcccacaacgactgtgtccataggcatggcataatctgaaatgaaacaaaatacagtcaaataagacagaaagta 45416450  T
Q  201 agcatgtatttgtggcagaaatgtgttaattaaagtcatgttctttccaattagagcactaacacaaaataaacagtcgtcccatctaagattaagtata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45416449 agcatgtatttgtggcagaaatgtgttaattaaagtcatgttctttccaattagagcactaacacaaaataaacagtcgtcccatctaagtttaagtata 45416350  T
Q  301 aaattgtcattatgtatatcccatacttgttttgtaacaaaatattacaggcaaagcagtcaataataatatctccaaactaaatagagcattgtgtata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45416349 aaattgtcattatgtatatcccatacttgttttgtaacaaaatattacaggcaaagcagtcaataataatatctccaaactaaatagagcattgtgtata 45416250  T
Q  401 taaactgttggaatagtttatctattttatcatttaacacaatacaattttatagataaacctcaaatattctaataagcataacatttaatttccgatt 500  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  45416249 taaactgttggaatagtttatttattttatcatttaacacaatacaattgtagagataaacctcaaatattctaataagcataacatttaatttccgatt 45416150  T
Q  501 ttttcctttcgagtaaataaatatgtattcaagaatcactaacccaacttctccatgaccagtttcatgtcactgcttgcttcctgtgccaccaaatcaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45416149 ttttcctttcgagtaaataaatatgtattcaagaatcactaacccaacttctccatgaccagtttcatgtcactgcttgcttcctgtgccaccaaatcaa 45416050  T
Q  601 aatgttaggaacagaaccaagattgataaattaactataaaaataaaatcaatatcggtaaataagtgtgattgttaa 678  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45416049 aatgttaggaacagaaccaagattgataaattaactataaaaataaaatcaatatcggtaaataagtgtgattgttaa 45415972  T

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