View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_40 (Length: 348)
Name: NF11809_high_40
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 121 - 336
Target Start/End: Original strand, 4683099 - 4683312
Alignment:
| Q |
121 |
agacattcatccaatcccactcaacccctctttctactaattttaatacaataaatacattcactccnnnnnnnn---atactacaatattacagtattt |
217 |
Q |
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| T |
4683099 |
agacattcatccaatcccactcaacccctctttctactaattttaatacaataaatacattcactcctttttttttttatactagaatatta-----ttt |
4683193 |
T |
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| Q |
218 |
cataaaaaatgataagggtcgacttttaatttaaaccattttttatcagttcgatataatttgaaactcaacatatatagctttagatttcactttgtct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4683194 |
cataaaaaatgataagggtcgacttttaatttaaaccattttttatcagttcgatataatttgaaactcaacatatatagctttagatttcactttgtct |
4683293 |
T |
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| Q |
318 |
tgggccaactctgtgctcc |
336 |
Q |
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||||||||||||||||||| |
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| T |
4683294 |
tgggccaactctgtgctcc |
4683312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 4682850 - 4682934
Alignment:
| Q |
19 |
caagtggtgtattctaaagtctaaaaggtgtgcaagcaatttcacttattctaattttgtagaaaaagaagaaaaactaaagata |
103 |
Q |
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| T |
4682850 |
caagtggtgtattctaaagtctaaaaggtgtgcaagcaatttcacttattctaattttgtagaaaaagaagaaaaactaaagata |
4682934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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