View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_42 (Length: 342)
Name: NF11809_high_42
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 2284279 - 2284591
Alignment:
| Q |
14 |
agggcaactacagtaacccaaaagtttaagcaagaagagtcattccaatgaaaaattaggtaccactgctcataagtatgcacaaggtttcaatatt-ct |
112 |
Q |
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| T |
2284279 |
agggcaactacagtaacccaaaagtttaagcaagaagagtcattccaatgaaaaattaggtac-actgctcataagtatgcataaggtttcaatatttct |
2284377 |
T |
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| Q |
113 |
tttgcctatcatttgagaaagttggaagctccatttagggagaatgaggataaagttggtgctctatttgagaaagttgggtgctccatttgacacaatt |
212 |
Q |
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| T |
2284378 |
tttgcctctcatttgagaaagttggaagctccatttagggagaatgaggataaagttggtgctgtatttgagaaagttgggtgctccatttgacacaatt |
2284477 |
T |
|
| Q |
213 |
tcatccat-ttttatgatttcatgtttgaaacagacacaagatcatcctcttcatctattaaccacaacaagtttgtcgacattgtatcacagtgtagag |
311 |
Q |
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| T |
2284478 |
tcatccatcttttatgatttcatgtttgaaacagacacaagatcctcctcttcatctattaaccacaacaagtttgtcgacattgtatcacagtgtagag |
2284577 |
T |
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| Q |
312 |
atctatgttcaatatt |
327 |
Q |
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||| ||||||||||| |
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| T |
2284578 |
atc--tgttcaatatt |
2284591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 40677340 - 40677238
Alignment:
| Q |
71 |
aggtaccactgctcataagtatgcacaaggtttcaatatt-cttttgcctatcatttgagaaagttggaagctccatttagggagaatgaggataaagtt |
169 |
Q |
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||||||| ||||||||||| ||||||||| |||||||| ||||||| | ||||||||||||||||| ||||||||||| | | ||| ||||||||| |
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| T |
40677340 |
aggtaccggtgctcataagtttgcacaaggactcaatatttcttttgcatctcatttgagaaagttggctgctccatttagacaaagtgaagataaagtt |
40677241 |
T |
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| Q |
170 |
ggt |
172 |
Q |
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||| |
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| T |
40677240 |
ggt |
40677238 |
T |
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