View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11809_high_5 (Length: 624)
Name: NF11809_high_5
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 13 - 608
Target Start/End: Complemental strand, 33374587 - 33373992
Alignment:
| Q |
13 |
gatggacatcactttcttgtatatgaatatgctgaaaatggatctctttataactggttattatctgagttttgcactcttagttggagtcagaggttaa |
112 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33374587 |
gatggaaatcactttcttgtatatgaatatgctgaaaatggatctctttataactggttattatctgagttttgcactcttagttggagtcagaggttaa |
33374488 |
T |
|
| Q |
113 |
gcatagcagttgatattgcaatagggctgcaatacttgcatgaacacacacaaccatgtatagtccataggaacatcaaatcaagtaacattcttcttga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33374487 |
gcatagcagttgatattgcaatagggctgcaatacttgcatgaacacacacaaccatgtatagtccataggaacatcaaatcaagtaacattcttcttga |
33374388 |
T |
|
| Q |
213 |
ctcaaaatttaaggccaagatagcaaatttttctgttgcaagaactacaaagaatcctatgataacaaaagttgatgtttttggctatggaatggttctg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
33374387 |
ctcaaaatttaaggccaagatagcaaatttttctgttgcaagaactacaaagaatcctatgataacaaaagttgatgttttaggttatggaatggttctg |
33374288 |
T |
|
| Q |
313 |
atggagctaataacaggaaagaagtttttgtcgtatagcgaacatagcgaggtgaatatgttgtggaaagattttaagtgtgtgtttgatacagaacaaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33374287 |
atggagctaataacaggaaagaagtttttgtcgtatagcgaacatagcgaggtgaatatgttgtggaaagattttaagtgtgtgtttgatacagaacaaa |
33374188 |
T |
|
| Q |
413 |
agagagaagaaattgttagaagatggatggatcctaagttaggaaggttttataatattgttgaagctcttagtttattcactttggcagtgaattgctt |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33374187 |
agagagaagaaattgttagaagatggatggatcctaagttagggaggttttataatgttgttgaagctcttagtttattcactttggcagtgaattgcat |
33374088 |
T |
|
| Q |
513 |
agaagaacaacctttgttaagaccaactatgggagaagttgttcttagtctttctcttctcactcaaccctctcctactttgttagaggtgtcttg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33374087 |
agaagaacaacctttgttaagaccaactatgggagaagttgttcttagtctttctcttctcactcaaccctctcctactttgttagaggtgtcttg |
33373992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 7169710 - 7169824
Alignment:
| Q |
128 |
ttgcaatagggctgcaatacttgcatgaacacacacaaccatgtatagtccataggaacatcaaatcaagtaacattcttcttgactcaaaatttaaggc |
227 |
Q |
| |
|
||||||| || ||||||||| |||||||||| || | ||| | ||| |||| || |||||| | ||||||| || ||||||| |||||| |||||||| |
|
|
| T |
7169710 |
ttgcaatcggtctgcaatacatgcatgaacatacttatccacgaataatccacagagacatcacaacaagtaatatccttcttggctcaaattttaaggc |
7169809 |
T |
|
| Q |
228 |
caagatagcaaattt |
242 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
7169810 |
caagatagcgaattt |
7169824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University