View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_52 (Length: 288)
Name: NF11809_high_52
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 53005978 - 53005707
Alignment:
| Q |
18 |
tataataaggtacggtgttcatagaaggttgctcggaatgat--------------cagtaagcaattgactatactaagatgtcaaatagcgtcctgtt |
103 |
Q |
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| T |
53005978 |
tataataaggtacggtgttcatagaaggttgctcggaatgataacataacagagatcagtaagcaattgactatactaagatgtcaaatagcgtcctgtt |
53005879 |
T |
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| Q |
104 |
cagcattaagtgacaaagtttagcagcaaatattatgtgcactgtaactacatggtttaacggtcaccaaacttcaaaacagaagctgaactgattgcat |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53005878 |
cagcattaagtgacaaagtttagcagcaaatactatgtgcactgtaactacatggtttaacggtcaccaaacttcaaaacagaagctgaactgattgcat |
53005779 |
T |
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| Q |
204 |
aattaacatagtttccaagcatttagtagatacaatgagttgcagtgtaaggttttaatctgatgcttcttc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53005778 |
aattaacatagtttccaagcatttagtagatacaatgagttgcagtgtaaggttttaatctgatgcttcttc |
53005707 |
T |
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