View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_55 (Length: 279)
Name: NF11809_high_55
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_55 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 35559485 - 35559757
Alignment:
| Q |
7 |
gaagcagagacaataacctcaaaagaaacattttttgtaacattaacatcaaacaatccattaccaccccaacaaacaacagaaccattagatcttctaa |
106 |
Q |
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| T |
35559485 |
gaagcagaaacaataacctcaaaagaaacattttttgtaacattaacatcaaacaatccattaccaccccaacaaacaacagaaccattagatcttctaa |
35559584 |
T |
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| Q |
107 |
tagcacaactatgttcagctcccaaagctaaatcagaatattccaaaggctcaacttgattaggaacattaatttgaccaaaattattacttcctttaca |
206 |
Q |
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| T |
35559585 |
tagcacaactatgttcagctcccaaagctaaatcagaatattccaaaggctcaacttgattaggaacattaatttgaccaaaattattacttcctttaca |
35559684 |
T |
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| Q |
207 |
aactaaaaacccttttgaattcaatccacaaacatgtgactcaccagctacaagactcaccatacaaacattc |
279 |
Q |
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| T |
35559685 |
aactaaaaacccttttgaattcaatccacaaacatgtgactcaccagctacaagactcaccatagaaacattc |
35559757 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 270
Target Start/End: Original strand, 31756333 - 31756530
Alignment:
| Q |
70 |
ccaccccaacaaacaacagaaccattagatcttctaatagcacaactatgttcagctcccaaagctaaatcagaatattccaaaggctcaacttgattag |
169 |
Q |
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|||||||||||||||||||||||||| |||||| || |||||||| ||||||| | || | |||| |||| ||| || |||| || |||| | |
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| T |
31756333 |
ccaccccaacaaacaacagaaccattcaatcttcgaacagcacaaccatgttcatcaccaagtgctatatcaccatactcaaaagcaccaccttgt---g |
31756429 |
T |
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| Q |
170 |
gaacattaatttgaccaaaattattacttcctttacaaactaaaaacccttttgaattcaatccacaaacatgtgactcaccagctacaagactcaccat |
269 |
Q |
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| T |
31756430 |
gaacatcaagttgaccagaactgttacttcctttgcaaaccaaaaaaccagttgaattcaaaccacaaacatttgaaccaccagctacaatactcaacat |
31756529 |
T |
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