View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_64 (Length: 265)
Name: NF11809_high_64
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_64 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 34424372 - 34424611
Alignment:
| Q |
18 |
ggttgcagatgttcttggagtagaagtttttaggcagacagttgctggtaatattcttgtgggaagttactgtgctttttcgaacaaaggtggtttggta |
117 |
Q |
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| T |
34424372 |
ggttgcagatgttcttggagtagaagtatttaggcagacagttgctggtaatattcttgtgggaagttactgtgctttttcgaacaaaggtggtttggta |
34424471 |
T |
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| Q |
118 |
agtgcaagacat--gtcctcttgaatgtttcaattttaataaatcttttatatcttttgaccaatcactgaatgcaggttcaccctcatacttccattga |
215 |
Q |
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| T |
34424472 |
agtgcaagacatatgtcctcttgaatgtttcaattttaataaatcttttatatcttttgaccaatcactgaatccaggttcaccctcatacttccattga |
34424571 |
T |
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| Q |
216 |
agacttggatgaactatctacacttcttcaagttcctttg |
255 |
Q |
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| T |
34424572 |
agacttggatgaactatctacacttcttcaagttcctttg |
34424611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 34420238 - 34420469
Alignment:
| Q |
20 |
ttgcagatgttcttggagtagaagtttttaggcagacagttgctggtaatattcttgtgggaagttactgtgctttttcgaacaaaggtggtttggtaag |
119 |
Q |
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|||| |||||||||||||| |||||||| ||||||||||||| ||||||||||||| || |||||||||||| | || |||| ||||||||||||| | |
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| T |
34420238 |
ttgctgatgttcttggagttgaagttttcaggcagacagttggtggtaatattctttctggcagttactgtgctctgtccaacagaggtggtttggtagg |
34420337 |
T |
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| Q |
120 |
tgcaagacatgtcctcttgaatgtttcaattttaataaatcttttatatcttttgacca-at-cactgaatgcaggttcaccctcatacttccattgaag |
217 |
Q |
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| T |
34420338 |
tgcaagacatgtccttttgaatgtttcaacttgaataaatgttctat--cttttgatcatatacactgaatgcaggtccaccctcatacttctgttgaag |
34420435 |
T |
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| Q |
218 |
acttggatgaactatctacacttcttcaagttcc |
251 |
Q |
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| T |
34420436 |
acttggatgaactctctacacttcttcaaattcc |
34420469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 24347439 - 24347535
Alignment:
| Q |
20 |
ttgcagatgttcttggagtagaagtttttaggcagacagttgctggtaatattcttgtgggaagttactgtgctttttcgaacaaaggtggtttggt |
116 |
Q |
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||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||| || |||| |||||| | || |||| |||||||||||| |
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| T |
24347439 |
ttgcagatgttctcggagtagaagttttcaggcagaccattgctggcaatattcttgttggtagtttttgtgctctctccaacagaggtggtttggt |
24347535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 24347614 - 24347682
Alignment:
| Q |
187 |
atgcaggttcaccctcatacttccattgaagacttggatgaactatctacacttcttcaagttcctttg |
255 |
Q |
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|||||||| |||||||| || || || ||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
24347614 |
atgcaggtccaccctcacacatctatagaagatttggatgaactttctacacttcttcaagttcctttg |
24347682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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