View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_68 (Length: 258)
Name: NF11809_high_68
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_68 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 47714228 - 47714466
Alignment:
| Q |
20 |
ggtactgtttggccgcgttgtccataaattttaatgttagaagtcaataacatcatgttgtcaagaagatgtacgaggaaaacaacagcatcaaaatttg |
119 |
Q |
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| T |
47714228 |
ggtactgtttggccgcgttgtccataaattttaatgttagaagtcaataacatcatgttgtcaagaagatgtacgaggaaaacaacagcatcaaaatttg |
47714327 |
T |
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| Q |
120 |
ctctagatagaggaataatactagtaaagtttatggtcagtcaactcaagtccaacacctcacctttacaaatttgtgtcatttgatcaattgtgtatac |
219 |
Q |
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| T |
47714328 |
ctctagatagaggaataatactagtaaagtttatggtcagtcaactcaagtccaacacctcacctttacaaatttgtgtcatttggtcaattgtgtatac |
47714427 |
T |
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| Q |
220 |
ctctgcaaatatatctttgtatattacatgagtgaattt |
258 |
Q |
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| T |
47714428 |
ctctgcaaatatatctttgtatattacatgagtgaattt |
47714466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 49 - 257
Target Start/End: Original strand, 47721598 - 47721807
Alignment:
| Q |
49 |
tttaatgttagaagtcaataacatcatgttgtcaagaagatgtacgaggaaaacaacagcatcaaaatttgctctagatagaggaataatactagt-aaa |
147 |
Q |
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| T |
47721598 |
tttaacgttagaagtcaataacatcatgttgtcaagaagatgtacgaggaaaagaacagcatcaaaatttgctctagatagaggaataatactagtaaaa |
47721697 |
T |
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| Q |
148 |
gtttatggtcagtcaactcaagtccaacacctcacctttacaaatttgtgtcatttgatcaattgtgtatacctctgcaaatatatctttgtatattaca |
247 |
Q |
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| T |
47721698 |
gtttatggtcagtcaactcaagtccaacaccttacctttacaaatttgtgtcatttggtcaattgtgtatacctctgcaaatatatattcgaatattata |
47721797 |
T |
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| Q |
248 |
tgagtgaatt |
257 |
Q |
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| T |
47721798 |
tgagtgaatt |
47721807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 49 - 257
Target Start/End: Original strand, 47728590 - 47728799
Alignment:
| Q |
49 |
tttaatgttagaagtcaataacatcatgttgtcaagaagatgtacgaggaaaacaacagcatcaaaatttgctctagatagaggaataatactagt-aaa |
147 |
Q |
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| T |
47728590 |
tttaacgttagaagtcaataacatcatgttgtcaagaagatgtacgaggaaaagaacagcatcaaaatttgctctagatagaggaataatactagtaaaa |
47728689 |
T |
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| Q |
148 |
gtttatggtcagtcaactcaagtccaacacctcacctttacaaatttgtgtcatttgatcaattgtgtatacctctgcaaatatatctttgtatattaca |
247 |
Q |
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| T |
47728690 |
gtttatggtcagtcaactcaagtccaacaccttacctttacaaatttgtgtcatttggtcaattgtgtatacctctgcaaatatatattcgaatattata |
47728789 |
T |
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| Q |
248 |
tgagtgaatt |
257 |
Q |
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| T |
47728790 |
tgagtgaatt |
47728799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 47710157 - 47710383
Alignment:
| Q |
20 |
ggtactgtttggccgcgttgtccataaattttaatgttagaagtcaataacatcatgttgtcaagaagatgtacgaggaaaacaacagcatcaaaatttg |
119 |
Q |
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| T |
47710157 |
ggtattgtttggccgcgttgtccataaattctaacgttagaagtcaataacatcatgttgtcaaga---tgtatgaagaaaaca------tcaaaatttg |
47710247 |
T |
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| Q |
120 |
ctctagatagaggaataatactagta-aagtttatggtcagtcaactcaagtccaacacctcacctttacaaatttgtgtcatttgatcaattgtg---- |
214 |
Q |
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| T |
47710248 |
ctctagttagaggaatagtactagtataagtttatggtcagtcaactcaagtcta-----gcacctttacaagtttgtgccatttgatcaattgtgtata |
47710342 |
T |
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| Q |
215 |
tatacctctgcaaatatatctttgtatattacatgagtgaa |
255 |
Q |
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| T |
47710343 |
tatacctctgcaaatatatttttgcaaattacatgagtgaa |
47710383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 194
Target Start/End: Original strand, 47755298 - 47755443
Alignment:
| Q |
45 |
aaattttaatgttagaagtcaataacatcatgttgtcaagaagatgtacgaggaaaacaacagcatcaaaatttgctctagatagaggaataatactagt |
144 |
Q |
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| T |
47755298 |
aaattctaacgttagaagtcaataacatcatgttgtcaaga---tgtttgaagaaaacaacagcatcaaaatttgttctaga----ggaagagtactagg |
47755390 |
T |
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| Q |
145 |
aaag-tttatggtcagtcaactc--aagtccaacacctcacctttacaaattt |
194 |
Q |
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| T |
47755391 |
aaaaatttatggtaagtcaactcaaaagtctagcacctcacttttacaaattt |
47755443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 47721376 - 47721408
Alignment:
| Q |
20 |
ggtactgtttggccgcgttgtccataaatttta |
52 |
Q |
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| T |
47721376 |
ggtactgtttggccgcgttgtccataaatttta |
47721408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 47728368 - 47728400
Alignment:
| Q |
20 |
ggtactgtttggccgcgttgtccataaatttta |
52 |
Q |
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| T |
47728368 |
ggtactgtttggccgcgttgtccataaatttta |
47728400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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