View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_73 (Length: 251)
Name: NF11809_high_73
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_73 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 10529563 - 10529439
Alignment:
| Q |
71 |
tcaatagtatctaggatttgtttccctaaaaaataggtaagatacccgccctcacataataacattcttactgtaaagttgaaagaacaatatatgaaac |
170 |
Q |
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| T |
10529563 |
tcaaaagtatctaggatttgtttccctaaaaaataggtaagatacccgccctcacataataacattcttactgtaaagttgaaagaacaatatatgaaac |
10529464 |
T |
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| Q |
171 |
tcaaatatcttagtgtgtgtgtgtg |
195 |
Q |
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| T |
10529463 |
tcaaatatcttagtgtgtgtgtgtg |
10529439 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 10536430 - 10536347
Alignment:
| Q |
110 |
agatacccgccctcacataataacattcttactgtaaagttgaaagaacaatatatgaaactcaaatatcttagtgtgtgtgtgtg |
195 |
Q |
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|||||||| |||||||||||||||||| ||||| | |||||||||| || |||||||||||||||||| ||||||||||||| |
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| T |
10536430 |
agatacccaccctcacataataacatttttactatgt--ttgaaagaacgatgtatgaaactcaaatatctgtgtgtgtgtgtgtg |
10536347 |
T |
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