View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_74 (Length: 250)
Name: NF11809_high_74
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_74 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 36 - 250
Target Start/End: Original strand, 25193108 - 25193327
Alignment:
| Q |
36 |
cctggatgttgatgagtgaaggtgtcccagatacttggtcctctaccaccttcctttactgcaccttcaaactatatacatgtttgcatttcacaaacac |
135 |
Q |
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| T |
25193108 |
cctggatgttgatgagtgaaggtgtcccagatacttggtcctctaccaccttcctttactgcaccttcaaactatatacatgtttgcatttcacaaacac |
25193207 |
T |
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| Q |
136 |
acaaaattaattaagaagatcaagtaaagtaaacat-----gnnnnnnncaatagctgtgtaattcttttaaaatatagtttctcatatattataaaggt |
230 |
Q |
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| T |
25193208 |
acaaaattaattaagaagatcaagtaaagtaaacataaaaaaaaaaaaacaatagctgtgtaattcttttaaaatatagtttctcatatattataaaggt |
25193307 |
T |
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| Q |
231 |
tttgtaggaactaggaactc |
250 |
Q |
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| T |
25193308 |
tttgtaggaactaggaactc |
25193327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 24999258 - 24999196
Alignment:
| Q |
47 |
atgagtgaaggtgtcccagatacttggtcctctaccaccttcctttactgcaccttcaaacta |
109 |
Q |
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| T |
24999258 |
atgagtaaaggtatcccatatacttggtccttttccaccttctcttactgcaccttcatacta |
24999196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 25161092 - 25161154
Alignment:
| Q |
47 |
atgagtgaaggtgtcccagatacttggtcctctaccaccttcctttactgcaccttcaaacta |
109 |
Q |
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| T |
25161092 |
atgagtaaaggtgtcccatatacttggtgttctaccaccttctgttgctgcaccttcgaacta |
25161154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 25169290 - 25169347
Alignment:
| Q |
47 |
atgagtgaaggtgtcccagatacttggtcctctaccaccttcctttactgcaccttca |
104 |
Q |
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| T |
25169290 |
atgagtgaatgtatcccaaatacttggtcctcttccaccttcacttgctgcaccttca |
25169347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 8162660 - 8162613
Alignment:
| Q |
36 |
cctggatgttgatgagtgaaggtgtcccagatacttggtcctctacca |
83 |
Q |
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| T |
8162660 |
cctggatgttgtttagtgaaggtgtcccatatacttggtcctctacca |
8162613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 9212673 - 9212600
Alignment:
| Q |
36 |
cctggatgttgatgagtgaaggtgtcccagatacttggtcctctaccaccttcctttactgcaccttcaaacta |
109 |
Q |
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| T |
9212673 |
cctggatatttatgggtgaaagtatcccatatacttggtgttctaccaccttcatttgctgcaccttcaaacta |
9212600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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