View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11809_high_8 (Length: 595)
Name: NF11809_high_8
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 6e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 45 - 346
Target Start/End: Original strand, 34015695 - 34015998
Alignment:
| Q |
45 |
catttgtgtacggagtctagatcataagtaggtagtgttcttggcttttttccagttttgtactagccattttttatcccttcgtcattttcacatttga |
144 |
Q |
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| T |
34015695 |
catttgtgtaaggactctagatcatatgtatgtagtgt-cttggattttctccaattttgcattagccattttcgatcccttcgtcattttcaaatttga |
34015793 |
T |
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| Q |
145 |
aatcactcctttctcattgcgagattcatttgtgccttcatcgaatcttgctaagtaatcgtgttcacctacataagaaacctcaggggtacatttagaa |
244 |
Q |
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| T |
34015794 |
aatcactcctttctcattgcgagtttcatttgtgccttcatcgaatcttgctaagtaatcatcttcacctacaaaagaaaccttaggggtacatttagaa |
34015893 |
T |
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| Q |
245 |
tgtttgtggggtattgggcctaaataatcgaactcaggtggcccatttgtactttgaccca-tgatc--caaaagcattttcctggcccaagctttataa |
341 |
Q |
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| T |
34015894 |
tgtttgtggggtattgggcctaaataatcgaaccaagatggccaatttttagtttgacccattgatccacaacagcattttcctgccccaagctatatga |
34015993 |
T |
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| Q |
342 |
actgc |
346 |
Q |
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| T |
34015994 |
actgc |
34015998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 462 - 548
Target Start/End: Original strand, 34017950 - 34018036
Alignment:
| Q |
462 |
atgacgtggtgatatgggttatg-tgtggaggagatttttctagttaacttgacttaatcaaatgtatccgttattttatgcatatcc |
548 |
Q |
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| T |
34017950 |
atgacgtggtgatattggttatgatgtggaagagatttctctagttaacttgacttaatc-aatatatccgttattttatgcatatcc |
34018036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 446
Target Start/End: Original strand, 34017808 - 34017840
Alignment:
| Q |
414 |
atcactggattttagatgcatgtgtaaaatgtg |
446 |
Q |
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| T |
34017808 |
atcactggattttagatgcatgtgcaaaatgtg |
34017840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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