View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11809_high_82 (Length: 243)

Name: NF11809_high_82
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11809_high_82
NF11809_high_82
[»] chr5 (3 HSPs)
chr5 (9-205)||(27843195-27843391)
chr5 (143-221)||(32251902-32251980)
chr5 (125-187)||(34177448-34177510)
[»] chr1 (2 HSPs)
chr1 (39-205)||(23996841-23997007)
chr1 (125-187)||(42785579-42785641)
[»] chr3 (3 HSPs)
chr3 (51-221)||(45967189-45967359)
chr3 (125-187)||(23049861-23049923)
chr3 (133-185)||(4740747-4740799)
[»] chr2 (1 HSPs)
chr2 (45-219)||(21578878-21579052)
[»] chr4 (4 HSPs)
chr4 (58-187)||(26169441-26169570)
chr4 (125-187)||(32807723-32807785)
chr4 (130-173)||(13136840-13136883)
chr4 (131-185)||(22495664-22495718)
[»] chr7 (3 HSPs)
chr7 (131-221)||(25107037-25107127)
chr7 (125-187)||(35515875-35515937)
chr7 (43-88)||(25106969-25107014)
[»] chr8 (1 HSPs)
chr8 (133-187)||(38738170-38738224)
[»] chr6 (1 HSPs)
chr6 (133-187)||(18673110-18673164)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 27843391 - 27843195
Alignment:
Q  9 agataacctgtaatatcgactgcttcgtttttgtaacaccaccaatatgactaaattgaataaaatgatctgacacattagcgggcatgaccgcagatac 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27843391 agataacttgtaatatcgactgcttcgtttttgtaacaccaccaatatgactaaattgaataaaatgatctaacacattagcgggcatgaccgcagatac 27843292  T
Q  109 acctacccaccgatatatatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctata 205  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||   |||||||||||||||    
T  27843291 acctacccaccgatatatatagttccaaacagagccaaataaattacaatgtaaaaataagtgggaagatgattccacctcgccacatcctcctata 27843195  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 32251980 - 32251902
Alignment:
Q  143 ccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctcta 221  Q
    ||||| ||||||||||| |||||||| || ||||||| ||||||| ||||||| ||||||| | |||||||||| ||||    
T  32251980 ccaaataaattacaatgcaaaaataaatgggaagatgtttccaccaaaccacaccctcctacacaagattgagcttcta 32251902  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 34177510 - 34177448
Alignment:
Q  125 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 187  Q
    |||||||||||||| || ||||| ||||||||||| || ||||| |||||||||| |||||||    
T  34177510 atatagttccaaactgaaccaaaaaaattacaatgaaataataagtgagaagatgtttccacc 34177448  T

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Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 23997007 - 23996841
Alignment:
Q  39 ttgtaacaccaccaatatgactaaattgaataaaatgatctgacacattagcgggcatgaccgcagatacacctacccaccgatatatatagttccaaac 138  Q
    ||||| ||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  23997007 ttgtagcaccaccaaaataactaaattgaacaaaatgatctgccacattagcgggcatgaccgcagatacacctacccaccgataaatatagctccaaac 23996908  T
Q  139 agagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctata 205  Q
    | ||||||||||||||||| |||||||||| || ||||||||||||||   ||||||||||||||||    
T  23996907 aaagccaaacaaattacaacgtaaaaataagtgggaagatgattccacgacaccacatcctcctata 23996841  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 42785641 - 42785579
Alignment:
Q  125 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 187  Q
    |||| |||||||||||| ||||| | ||||||||| |||||||| |||||||||| |||||||    
T  42785641 atatggttccaaacagatccaaaaatattacaatgaaaaaataagtgagaagatgtttccacc 42785579  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 45967189 - 45967359
Alignment:
Q  51 caatatgactaaattgaataaaatgatctgacacattagcgggcatgaccgcagatacacctacccaccgatatatatagttccaaacagagccaaacaa 150  Q
    |||||||||||||||| | ||||||||||| ||||||| | |||||  ||||| | ||||| | ||||   || ||||  ||||||||| ||||||| ||    
T  45967189 caatatgactaaattgtaaaaaatgatctgccacattatcaggcatctccgcataaacaccaatccactagtaaatatgattccaaacatagccaaataa 45967288  T
Q  151 attacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctcta 221  Q
    | |||||||||||||||| |||| ||||| ||| ||| ||||||| ||||||| | |||||||||| ||||    
T  45967289 actacaatgtaaaaataagtgaggagatgtttcgaccaaaccacaacctcctacacaagattgagcttcta 45967359  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 23049923 - 23049861
Alignment:
Q  125 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 187  Q
    |||| ||| |||||||| ||||||||||||||||||||||| |  |||||||||  |||||||    
T  23049923 atatggtttcaaacagacccaaacaaattacaatgtaaaaaaaggtgagaagatatttccacc 23049861  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 4740799 - 4740747
Alignment:
Q  133 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattcca 185  Q
    ||||||||| ||||| |||||||||||||||||||| ||   |||||||||||    
T  4740799 ccaaacagatccaaaaaaattacaatgtaaaaataagtgttgagatgattcca 4740747  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 219
Target Start/End: Original strand, 21578878 - 21579052
Alignment:
Q  45 caccaccaatatgactaaattgaataaaatgatctgacacattagcgggcatgaccgcagatacacctacccaccgatatatatagttccaaacagagcc 144  Q
    |||| ||||||||||||||||||| |||||||||   ||||||| | ||||| |||| ||| ||||| | |||||  || |||| |||||||||| ||||    
T  21578878 cacccccaatatgactaaattgaaaaaaatgatccaccacattaacaggcataaccgtagaaacaccaatccacctgtaaatatggttccaaacacagcc 21578977  T
Q  145 aaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctc 219  Q
    | | ||| |||||||||||||||| || ||||||| ||| ||| | || || ||||||| | |||||||||||||    
T  21578978 atagaaactacaatgtaaaaataagtgtgaagatgtttctaccaagccgcaacctcctacacaagattgagcctc 21579052  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 26169441 - 26169570
Alignment:
Q  58 actaaattgaataaaatgatctgacacattagcgggcatgaccgcagatacacctacccaccgatatatatagttccaaacagagccaaacaaattacaa 157  Q
    |||||| ||||||||||||||   ||||  ||| ||||| |||| ||| ||||||| |||| || | ||||  | ||||||||||||||| |||||||||    
T  26169441 actaaactgaataaaatgatcaaccacaacagcaggcattaccgtagacacacctagccactgaaagatatgatgccaaacagagccaaataaattacaa 26169540  T
Q  158 tgtaaaaataactgagaagatgattccacc 187  Q
    ||||||||||| |||||| ||| |||||||    
T  26169541 tgtaaaaataagtgagaatatgtttccacc 26169570  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 32807723 - 32807785
Alignment:
Q  125 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 187  Q
    |||| |||||||||||| ||||| | |||||||||||||||||| |||||| ||| |||||||    
T  32807723 atatggttccaaacagacccaaaaacattacaatgtaaaaataagtgagaatatgtttccacc 32807785  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 13136883 - 13136840
Alignment:
Q  130 gttccaaacagagccaaacaaattacaatgtaaaaataactgag 173  Q
    |||||||||||||||||| | |||||||||||||||||| ||||    
T  13136883 gttccaaacagagccaaaaagattacaatgtaaaaataaatgag 13136840  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 22495664 - 22495718
Alignment:
Q  131 ttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattcca 185  Q
    ||||||||||| ||||| |||| ||||||||||||||  |||||||||| |||||    
T  22495664 ttccaaacagaaccaaaaaaatcacaatgtaaaaatagatgagaagatgtttcca 22495718  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 25107037 - 25107127
Alignment:
Q  131 ttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacccaaccacatcctcctatataagattgagcctcta 221  Q
    ||||||||| ||||||| |||||||| ||||||||||| || | ||||| ||| ||| ||||||| ||||||| | |||||||||| ||||    
T  25107037 ttccaaacacagccaaataaattacagtgtaaaaataagtgtggagatgtttcgaccaaaccacaacctcctacacaagattgagcttcta 25107127  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 35515937 - 35515875
Alignment:
Q  125 atatagttccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 187  Q
    |||| |||||||| ||||||||||||| ||||||||||||| |  |||||||||| |||||||    
T  35515937 atatggttccaaatagagccaaacaaaatacaatgtaaaaaaaggtgagaagatgtttccacc 35515875  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 25106969 - 25107014
Alignment:
Q  43 aacaccaccaatatgactaaattgaataaaatgatctgacacatta 88  Q
    |||||| ||||||||||||||||| | ||||||||||| |||||||    
T  25106969 aacacccccaatatgactaaattgtaaaaaatgatctgccacatta 25107014  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 38738224 - 38738170
Alignment:
Q  133 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 187  Q
    |||||||||||||||||||  ||||||||| ||||| || ||||||| |||||||    
T  38738224 ccaaacagagccaaacaaagaacaatgtaacaataagtgtgaagatgtttccacc 38738170  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 18673164 - 18673110
Alignment:
Q  133 ccaaacagagccaaacaaattacaatgtaaaaataactgagaagatgattccacc 187  Q
    |||||||||||||||||||  ||||||||| ||||| || ||||||| |||||||    
T  18673164 ccaaacagagccaaacaaagaacaatgtaacaataagtgtgaagatgtttccacc 18673110  T

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