View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11809_high_90 (Length: 238)
Name: NF11809_high_90
Description: NF11809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11809_high_90 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 25193764 - 25193542
Alignment:
| Q |
16 |
ggatcgtcatcttaccaagtatgtacatatttttgttgatgtaaattaagatatcttattcacgcaactatatatagtaattctttttcaacaatgaaac |
115 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25193764 |
ggatcgtcatcttatcaagtatgtatatatttttgttgatgtaaattaagatatcttattcatgcaactatatatagtaattctttttcaacaatgaaac |
25193665 |
T |
|
| Q |
116 |
cttaaatagtgctcagactagtgcaaaatcatgttgcgatttattgaaattgtgccacgttgaagttagtacacaatacataactatatatttattccaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||| | |||||| |||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
25193664 |
cttaaatagtgctcagactagtgcaaaatcgtgttgcaatttattgaagtcgtgccatgttgaagttagtacacaatacaaaactatatatttatcccaa |
25193565 |
T |
|
| Q |
216 |
aattgtatcacgattttttcttc |
238 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
25193564 |
aattgtgtcacgattttttcttc |
25193542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 42017970 - 42018019
Alignment:
| Q |
108 |
aatgaaaccttaaatagtgctcagactagtgcaaaatcatgttgcgattt |
157 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
42017970 |
aatgcaaccttaaatagtgctcaaactagtgcaaaatcatgttgcaattt |
42018019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 3318866 - 3318906
Alignment:
| Q |
105 |
aacaatgaaaccttaaatagtgctcagactagtgcaaaatc |
145 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
3318866 |
aacaatgaagccttaaatagtactcggactagtgcaaaatc |
3318906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University